BAC Information

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BAC

Clone NameMSMg01-405N09
Chromosome6 (Build37)
Map Location 90,517,989 - 90,699,323
singlet/doubletdoublet
Overlap geneAldh1l1, Slc41a3, Iqsec1
Upstream geneChchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671, Chst13, Uroc1, Zxdc, Ccdc37, Klf15
Downstream geneLOC100043646, EG665685, Nup210, Hdac11, Fbln2, LOC665716, Wnt7a, LOC100043659, LOC625420, Chchd4, Tmem43, Xpc, Lsm3, Slc6a6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405N09.T7 (MSMg01no405_n09.b1)MSMg01-405N09.TJ (MSMg01no405_n09.g1)
ACCAG504173AG504174
length763747
length of high quality
(start - end)		507 (50 - 556)553 (78 - 630)
definitionCHROMAT_FILE: MSMg01no405_n09.b1 PHD_FILE: MSMg01no405_n09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:56 2005CHROMAT_FILE: MSMg01no405_n09.g1 PHD_FILE: MSMg01no405_n09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,517,989 - 90,518,491)(90,698,771 - 90,699,323)
sequence
NNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCACGTGTACTTTACAGCACATGAAGAATCCATGTGTGTCCC
TTACTTAACAAGTACCACCCTCATACCATGTGAAAAGAGAGTGGTAAGTC
CTCACAAGCTAAGGGACTTGGGGACACTTGCTGAGCTCCTCCTGATTGCC
AGACAGTGGGTGGGAGTGGTGGGTGAAGCTGCTGTCCATGTAGAGCTCCT
ATCGGTGCAGACAGTAAGATAGCTTTGGAAGACATTCTGTACAGAACAGG
GCCTGTGAGACGAGGCCTCAGATATGTTGTCAGTGTTGGAGGGAAGCTGA
GAGCTGGCTACAGAGAAAAGATCTGGATAAACCTTAGCCCAGAGGACTAT
GTGTGTAAGGACATTGCAGGTGCAAGAACACCACAGGTGCAGGGACAGCA
CAGGTGCAGGGACAGCACAGATGCGGGAACTGCACAGGTGCAGGGATAGC
ACAGGTGCAGGGACAGCACAGGTACAGGGACAGCACAGGTGCAGGGACAG
CACAGGTGTAGGGACACCTAAATGCATGGACAGTCCCTGTTTAATAGGGC
ACCTCTGCCCTGATCTGAAACTGAATGGAGGTGGTTCTCTTTGGGACCCG
CGTTTATATTTTTGTTATGTAGACCTTCCACCACCATGCTTGATGTGTGC
ACGTGTTCTTTTCCTTGTCAAAAGTTGCTTCTTCCTCTTTAAAAACCTTT
TTTGCTCTCTCGG

NCCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCTGAATTCTGGGAAGTAGC
AGCATCAGAATTGGAATCCAGAACTTACCTTTCCTTTGAGGTTGAGGGTG
TGTGTCCCAAACACTGACTTAAAAGAGACTTCAGTATTTCATATCAAGCT
GAGCTCATTGTTTCCATCCCTTCCTTCTGGCTGCAGCTGATAGCCTTACC
TCTCCCTCATCTGCAAGATCATCTGAGAGCTAGTCCCTACCAGACCCAGA
GCTGCTATCCATCTGGTCTGCCTGGAAGATGGCCCTTTGCTAGCAGCTCC
CAGCCTTCTTCAGAGTGGTCAGTGTCTCCTGCAAGCTCAGTAAGTCAGAA
ATATGGGTATGATGACACACCCTCATATCCCTCACCTCTTCTAGCCTCTT
CTCATGCACACAGCTGTGAACTGGAAGGGTATCTACCATTTCAGGGAAGA
CCAGAGGAAGACAAATCTGTGGAAGAGTGACTGTAGGCAGGGTCTCCAGC
CTCTTCATTTCTGTTTCTTCATTTCTTTGAGATGGACAAAGATTCCCATT
AGGACACACACTGTGTCATTTACTTGGAAGGCTCCAGGAAAAGTTGGCCA
TGAGGCTACTGCCCATCAGAAATTCATCTGTATGTCGGCTGTAACTACAC
TCACAGAAAAATCCCAGCATCTTCCCCAGTTTCCTCCCTCTGGACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_n09.b1 MSMg01no405_n09.b1 CHROMAT_FILE:
MSMg01no405_n09.b1 PHD_FILE: MSMg01no405_n09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:56 2005
         (507 letters)



>mm_chr6_90517785_90518691
          Length = 907

 Score =  934 bits (483), Expect = 0.0
 Identities = 498/503 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacgtgtactttacagcacatgaagaatccatgtgtgtcccttacttaacaagt 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacgtggactttacagcacatgaagaatccatgtgtgtcccttacttaacaagt 264

                                                                       
Query: 65  accaccctcataccatgtgaaaagagagtggtaagtcctcacaagctaagggacttgggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 accaccctcataccatgtgaaaagagagtggtaagtcctcacaagctaagggacttgggg 324

                                                                       
Query: 125 acacttgctgagctcctcctgattgccagacagtgggtgggagtggtgggtgaagctgct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acacttgctgagctcctcctgattgccagacagtgggtgggagtggtgggtgaagctgct 384

                                                                       
Query: 185 gtccatgtagagctcctatcggtgcagacagtaagatagctttggaagacattctgtaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtccatgtagagctcctatcggtgcagacagtaagatagctttggaagacattctgtaca 444

                                                                       
Query: 245 gaacagggcctgtgagacgaggcctcagatatgttgtcagtgttggagggaagctgagag 304
           ||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||
Sbjct: 445 gaacagggcctgtgagacgaggcctcagagatggggtcagtgttggagggaagctgagag 504

                                                                       
Query: 305 ctggctacagagaaaagatctggataaaccttagcccagaggactatgtgtgtaaggaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctggctacagagaaaagatctggataaaccttagcccagaggactatgtgtgtaaggaca 564

                                                                       
Query: 365 ttgcaggtgcaagaacaccacaggtgcagggacagcacaggtgcagggacagcacagatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgcaggtgcaagaacaccacaggtgcagggacagcacaggtgcagggacagcacagatg 624

                                                                       
Query: 425 cgggaactgcacaggtgcagggatagcacaggtgcagggacagcacaggtacagggacag 484
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 625 cgggaactgcacaggtgcagggatagcacaggtgcagggacagcacaggtgcagggacag 684

                                  
Query: 485 cacaggtgcagggacagcacagg 507
           |||||||||||||||||||||||
Sbjct: 685 cacaggtgcagggacagcacagg 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no405_n09.g1 MSMg01no405_n09.g1 CHROMAT_FILE:
MSMg01no405_n09.g1 PHD_FILE: MSMg01no405_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:56 2005
         (553 letters)



>mm_chr6_90698571_90699523
          Length = 953

 Score = 1038 bits (537), Expect = 0.0
 Identities = 549/553 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttctgaattctgggaagtagcagcatcagaattggaatccagaacttacctttccttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ttttctgaattctgggaagtagcagcatcagaattggaatccagaacttacctttccttt 694

                                                                       
Query: 61  gaggttgagggtgtgtgtcccaaacactgacttaaaagagacttcagtatttcatatcaa 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gaggttgagggtgtgtatcccaaacactgacttaaaagagacttcagtatttcatatcaa 634

                                                                       
Query: 121 gctgagctcattgtttccatcccttccttctggctgcagctgatagccttacctctccct 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gctgagctcattgtttccatgccttccttctggctgcagctgatagccttacctctccct 574

                                                                       
Query: 181 catctgcaagatcatctgagagctagtccctaccagacccagagctgctatccatctggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 catctgcaagatcatctgagagctagtccctaccagacccagagctgctatccatctggt 514

                                                                       
Query: 241 ctgcctggaagatggccctttgctagcagctcccagccttcttcagagtggtcagtgtct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 513 ctgcctggaagatggccctttgctagcagctcccagccttcttcagagtggtcagtgtcc 454

                                                                       
Query: 301 cctgcaagctcagtaagtcagaaatatgggtatgatgacacaccctcatatccctcacct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cctgcaagctcagtaagtcagaaatatgggtatgatgacacaccctcatatccctcacct 394

                                                                       
Query: 361 cttctagcctcttctcatgcacacagctgtgaactggaagggtatctaccatttcaggga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cttctagcctcttctcatgcacacagctgtgaactggaagggtatctaccatttcaggga 334

                                                                       
Query: 421 agaccagaggaagacaaatctgtggaagagtgactgtaggcagggtctccagcctcttca 480
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 333 agaccagaggaagacaaatctttggaagagtgactgtaggcagggtctccagcctcttca 274

                                                                       
Query: 481 tttctgtttcttcatttctttgagatggacaaagattcccattaggacacacactgtgtc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tttctgtttcttcatttctttgagatggacaaagattcccattaggacacacactgtgtc 214

                        
Query: 541 atttacttggaag 553
           |||||||||||||
Sbjct: 213 atttacttggaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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