NCGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAAAAGTTTCTTCATGGGCAGGTGCTATTCAGTGGGCTCTGG
ACATGGCTAGAATACCCACTTAGCAGATATTGGCTAACTCCTCAGTTTGC
TTAATTATTCAACAAAAAGTGCAGGATGTAGAGCATGCTTGCTTGTTAGC
TTGAAATTACTAACGAATACAAACTATTTAAGTCATTTTCATTAATATAT
AACTAATGTTATTAAATATGAGCAGTAATATAAAAGTTATTTCTACAGAA
TTTATTAACTGGCTGCTTTCTTCTAAATGGCTTCAAATAACTAACTTATT
CGAGTTAAGTGGCTAACACTCCTGACTTATTTTGCAATTACTGCAGTTAT
GGAAATACAGGGACAAAAGAGGTAATTTATCAAATACTTCATAAAGGGTG
TGGAACATTTTTCAAAGTTGCCCTATACTTTGAAGCATATGAAACTAAAG
TGGTTTAAAGGAGAGTTATTAAGTTTTAAATAACCACTACTATAGATGTT
GTGCCTTCCTCTGAATTATCACACAAAGGACATTAGTCATGATTGTGCTA
TGTCTTGTTGAAATAAAAAGCACTGCATATTGTTACATGAAATGAATCAA
GGGCAACGCACTCTTGGTGAGTCATTAGATTGTGATTTTACGCTCCTGTG
CCAGGTTTCTTGCACTCGAGTGAGTGTTTCGCAAGTTGGAAAAAATTTTT
C

CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGAACTTTTCAGGGGCTATAT
AAATGCTAGGATCCAAGAGGCAGGTGGGTTAGTGTTTGTTGGTGGGTTGC
TGTTGGGTGCCACTTCTTCAGTACACACACACAGACACACACTGACACAC
AAACAGACAAGCACACAGACACACAGACACACAGACACACAGACACACAG
ACACACAGACACACAGACACAAACACAGACACACACAGACACACACACAG
ACACACACACAGACACACACACACACTTACACACACACTGCTTCCCACTA
AACCTGCAGCTCACCACATGGTTAGATTAGTTGTTCTCAATCCACAATGA
TTTCCTATAATGAGAATGCAGACAAAAAATTGTGACACAGGTTCTGGTGA
CACAAACTTTGATCCCATTACTTGTACAAAAAGGTATTTGCCAAGGAAAG
CATCTATCACCCATGCTTAATTTATAAATATCTATTTCCTAAACTATTTA
TTTCTTGTTATAGATAATGAACCATTTGTGACTGATACTACGTAATGTGA
AATACACATGTAAACCATCCTCGTTGGATTGTACGAGTTTTGAGATTAAC
TCACATACGCATACCAGTCCACACAACGCTTGCTTGGCCAGCTAAACACG
GCACATAGAATATACCCCCCCAATCTTTATATATCTTTTAATCCCTCGCC
CC

Query= MSMg01no405_p07.b1 MSMg01no405_p07.b1 CHROMAT_FILE:
MSMg01no405_p07.b1 PHD_FILE: MSMg01no405_p07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:06 2005
         (603 letters)



>mm_chr6_63540123_63541125
          Length = 1003

 Score = 1098 bits (568), Expect = 0.0
 Identities = 592/600 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaaaagtttcttcatgggcaggtgctattcagtgggctctggacatggctaga 63
           ||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaaaagtgccttcatgggcaggtgctgttcagtgggctctggacatggctaga 263

                                                                       
Query: 64  atacccacttagcagatattggctaactcctcagtttgcttaattattcaacaaaaagtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atacccacttagcagatattggctaactcctcagtttgcttaattattcaacaaaaagtg 323

                                                                       
Query: 124 caggatgtagagcatgcttgcttgttagcttgaaattactaacgaatacaaactatttaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct: 324 caggatgtagagcatgcttgcttgttagcttgaaattactaacgaatacaaacaatttat 383

                                                                       
Query: 184 gtcattttcattaatatataactaatgttattaaatatgagcagtaatataaaagttatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtcattttcattaatatataactaatgttattaaatatgagcagtaatataaaagttatt 443

                                                                       
Query: 244 tctacagaatttattaactggctgctttcttctaaatggcttcaaataactaacttattc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctacagaatttattaactggctgctttcttctaaatggcttcaaataactaacttattc 503

                                                                       
Query: 304 gagttaagtggctaacactcctgacttattttgcaattactgcagttatggaaatacagg 363
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 504 gagttaagtggctaacactcctgacttattttgcaattactgcagttatggaaacacagg 563

                                                                       
Query: 364 gacaaaagaggtaatttatcaaatacttcataaagggtgtggaacatttttcaaagttgc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 564 gacaaaagaggtaatttatcaaatacttcataaagggtgtggaacatttttcaaagttgg 623

                                                                       
Query: 424 cctatactttgaagcatatgaaactaaagtggtttaaaggagagttattaagttttaaat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cctatactttgaagcatatgaaactaaagtggtttaaaggagagttattaagttttaaat 683

                                                                       
Query: 484 aaccactactatagatgttgtgccttcctctgaattatcacacaaaggacattagtcatg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aaccactactatagatgttgtgccttcctctgaattatcacacaaaggacattagtcatg 743

                                                                       
Query: 544 attgtgctatgtcttgttgaaataaaaagcactgcatattgttacatgaaatgaatcaag 603
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 744 attgtgctatgtcttgttgaaataaaaagcactacatattgttacatgaaatgaatcaag 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)