BAC Information

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BAC

Clone NameMSMg01-405P12
Chromosome6 (Build37)
Map Location 3,752,551 - 3,752,697
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039885, LOC100039896, LOC100040185, EG667335, Samd9l, AI987662, Ccdc132, Calcr
Downstream geneLOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1, LOC667381, LOC100039965, Col1a2, Casd1, Sgce, Peg10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405P12.T7 (MSMg01no405_p12.b1)MSMg01-405P12.TJ (MSMg01no405_p12.g1)
ACCAG504274AG504275
length762855
length of high quality
(start - end)
95 (148 - 242)153 (80 - 232)
definitionCHROMAT_FILE: MSMg01no405_p12.b1 PHD_FILE: MSMg01no405_p12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:07 2005CHROMAT_FILE: MSMg01no405_p12.g1 PHD_FILE: MSMg01no405_p12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTTGGTCTCATGTCACCNNANGANCNNNAATTCGAAGGAGCGCGGAANC
NNNGCCTGACTTTACCTGAGACANGNNCAAGAGNNGGGANGGAACNCGGC
CCCAGGCTTTTATACCCATTGACTTTACAATACCTTCAGGGCACGNAGAC
TTTCTTTTCTCTTACAAGGTGAAGGCACACAGTTGTCCTTCCTTATCTTA
ACTCCTGTTGATCCAGGAGAAACACAGTATGTAAGAAGTTCTGTTTAACT
GCCTATGCCCATCCTAGCAGTGCACTGTTGAATCACATAAACTGGAGATC
TGGACAGTGTTTTTTTTTTCTTCATTTTACTAACTGCCCAACAGTTATTA
TATCTTCACCCCCCCCAGAATGATTTGGAGCTGGAGAGATGGTTCTGCAG
TTACGAGCACGTGTTGCTCTTTCAGGTCTGACTCTGAGCATATACGTGGC
ATCTCATTAATATTCTGCATTTCAGATCCATAGGATCCAGCACCCTCTTC
TGATTTCCATCTGATTGTACGCACCTGCTGCTGCACATACACTTTCTATT
ATAGCTTTTGTATTTCATCCGCATCGCATCCTCTTTTAGTCTTCTTAGGA
CCTCCCTCCCGCATCGTTTATCTACATTTGCTTCCTCGTCTTTTTTATCC
TCCTTGTCCTTTTTCTTTCCCTTCCCCCTCGCACGCTCCCTCTTTGTACT
GCCCTCGTTATTTTTTGTCTTTCTTTACCCCATTCTTCTCCCCTTCTGGC
TTTTCTTATCCG
NTTTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTAAGTATAAAAAGGTTTT
TTTGTGTGCAGGGGGGTTCTTTCTAAAACAAAATTAGTGTGAAAAATTAT
AATTTGCAAAACTTAGAGCAGAGTAAATGAAGATGACAGGGTCGCAGGTA
CATAGGGAGTGAGGGAGGGAGGAAGGGAGGTAGGNTTCCTTCCCTTTTTC
TCCTCCCTTCTCCCCTCTCTTCCTTTCCTCCTTCCTTTTCTTCCCTTCTT
CTTTTTCTCCTGTTCCCCCCTTCCTTTCTCTCCCCTCTCCTTTTTTCCTT
CCCTTTCTCTTTCCTCTCATCCTTTTCCCTTTTCTTTCTCCCCTTTCCCC
CTTTTTTTTTCCTCCCCCTCCCCTCTCCTTCCTCTACTTTTCTACCTCTC
CCTTCCCCTCTTCCTTTTTTTTCCCTCCCTTCCTTCTCTCCTTCTTTCCT
TTTTCCCTTCATCTTTCATCTCTTTTTTCTCGGCGGCTCTGGTTCCGGTT
TTCTCTTTTTTGCGCTCTCTTACCCTTTTTTCCCCCCCTCTCTCCCTTCT
TCCCCTTCTCCTTTTTCCCCTACTTTCTCCCTTCACTCCCCCTTCTTTTT
TTCCATTTTTTCCCTCTCCCCCCCCTTTTCCCTCTTTTTTTTCGCCCTTT
TCTTCTTTTCCCTCTTTTATTTTTTCATTTTTATCCCCCCCCTTTATTCC
CTCCCTCTTTTTTCTCTTCTTCTTCCCCCCTTCTCTTCCTATTTATCCCC
CTTTCTTTTTTTCATTTTCACCCTCTTTTATCCCTTTTCCCCCCTCTCTT
TTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_p12.g1 MSMg01no405_p12.g1 CHROMAT_FILE:
MSMg01no405_p12.g1 PHD_FILE: MSMg01no405_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:07 2005
         (153 letters)



>mm_chr6_3752373_3752926
          Length = 554

 Score =  253 bits (131), Expect = 3e-72
 Identities = 143/147 (97%), Gaps = 1/147 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattaagtataaaaa-ggtttttttgtgtgcaggggggttctttctaaaacaaaattagt 59
           ||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 325 aattaagtataaaaagggtttttttgtgtgcagggggtttctttctaaaaccaaattagt 266

                                                                       
Query: 60  gtgaaaaattataatttgcaaaacttagagcagagtaaatgaagatgacagggtcgcagg 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 gtgaaaaattataatttgcaaaacttagagcagagtaaatgaagatgacagggttgcagg 206

                                      
Query: 120 tacatagggagtgagggagggaggaag 146
           |||||||||||||||||||||||||||
Sbjct: 205 tacatagggagtgagggagggaggaag 179


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 554
Length adjustment: 8
Effective length of query: 145
Effective length of database: 546
Effective search space:    79170
Effective search space used:    79170
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)