BAC Information

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BAC

Clone NameMSMg01-406C13
Chromosome6 (Build37)
Map Location 114,659,174 - 114,659,363
singlet/doubletsinglet
Overlap geneAtg7
Upstream geneTatdn2, Ghrl, Sec13, Atp2b2, Slc6a11, LOC666491, Slc6a1, Hrh1
Downstream geneVgll4, 1500001M20Rik, LOC100043420, Syn2, Timp4, Pparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406C13.T7 (MSMg01no406_c13.b1)MSMg01-406C13.TJ (MSMg01no406_c13.g1)
ACCAG504419AG504420
length752757
length of high quality
(start - end)
193 (122 - 314)360 (77 - 436)
definitionCHROMAT_FILE: MSMg01no406_c13.b1 PHD_FILE: MSMg01no406_c13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:22 2005CHROMAT_FILE: MSMg01no406_c13.g1 PHD_FILE: MSMg01no406_c13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGTCTATAATTTGTGGCGCTAAAAGANNNACATTTGCAAAACACGGCGG
AATCAAGAGGTGACAGAAAAATACCCCCAAGGANGGCACAGGGACATACC
TCAGAGATCACATGTTGACTGGACTAGGTGTTTTTAGTCTTGTTTTGAGG
TTAAAAAAAAAAAGCCAAAGGAAACCAAGGGAGTGTGGGGGAGACAGTGG
CCAGCCATTTCCAGCAAGTACTTGGTTCAAATGTTCATCTGTGGGTTTTA
GACTCACCCCTCAGGATGCTGCAGGACAGAGACCATCAGCTCCACAGCCA
GGGCACCTGCATTCTCTGCTTGTCCTGGGCGGCTCACTGGGCACTGCTGG
TCCAGAGTCTGGTCTCTGCCCGACTAAAGAGAATCAACCTCAGACATGCA
TAGAATATTCTAATTCTGCCAGACCTAGGTGAACCTGAAACTCCCTAAGA
TAAAGTTTTTAAATTCCCCCCTGGCTTGCCTTGGGGAGAAAATAGTGGTG
AATTTAATCAAGGCAACTACCTCCGAACAGGAATGGGGCCTTTATTCTAA
AACGAAGTGGACACCTTTTTTCCTCTCTTCATGGCTTTCTTGGGGGGTTC
TTAACTCCCGGTTTCCTTCTACTGGGAATCTCTTTCCCATTTTTCTTTGG
CCGGGCCATCCCTATTTTTTTTTTCTAGTAAAATCTTTCCACACTTGGCG
TTGCAAAATCTCGTCCCCGCCCCGGCGTTAACTCGCGTTATTCTCAATGC
CN
NTTCGATGATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGCTGGGACTGGAGATGGCAAAA
GATAAGGGAAAGTTGGTCCACAAATCCTTGCTCCTCTTGGGACAATGGCT
GTGCTCCCTGGAGCTGTACTGAAGTCACCTCTGGCAAGACAAACCTGGAA
ACTGAGCTCGACGGTGCATCCTAGCGATCTGCATCCCTATATTTCTCGGC
AAACCGGGACCAAAGAACTGGGTGCTGGCAGGTGCTCTCTTGTTCCCAGA
GGAGGAGGCTATGTGTATTGTTGACCTCCCAGGACCGGGTACTTCTTCCT
AGGCACAGTGTGGGCCGGCCATCAGTCCCTTAGTAGGTCCTCAAAATTGA
TTCTCCACTCTCCACTCGATTTGACATGAATGTATCCAGTTGCTGTGTGG
TTCCAGTAAAGGGGGCTCAGTGTACACTGTCTGGTACGTTCTCTCTCTCG
CTCGCTCTCACGCCAATTTCCTCCTGGGATCATCCTGTATCATTTGTATG
TTCTTCTTCCCTGTTTGTTCTGGATTCCTTTCCGCTCATCATTTATAAAC
TCTATTCTTCTCTTTCTTTACACCCTTTTTTTTCCCTTCTCTTTCTTCTC
TTATTTCTCATCCCAGAACCCCCCCATTCAGCACTCTTTTATTTATCCTT
CCCTCCTCTTCTTACACTCTTTCACATTTAAATCTTCTCCATTTCTCCCT
ATTTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_c13.b1 MSMg01no406_c13.b1 CHROMAT_FILE:
MSMg01no406_c13.b1 PHD_FILE: MSMg01no406_c13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:22 2005
         (193 letters)



>mm_chr6_114658971_114659566
          Length = 596

 Score =  329 bits (170), Expect = 8e-95
 Identities = 184/190 (96%), Gaps = 3/190 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   taggtgtttttagtcttgttttgaggtt---aaaaaaaaaaagccaaaggaaaccaaggg 60
           ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||
Sbjct: 393 taggtgtttttagtcttgttttgaggttaaaaaaaaaaaaaagccaaaggaaaccaaggg 334

                                                                       
Query: 61  agtgtgggggagacagtggccagccatttccagcaagtacttggttcaaatgttcatctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 agtgtgggggagacagtggccagccatttccagcaagtacttggttcaaatgttcatctg 274

                                                                       
Query: 121 tgggttttagactcacccctcaggatgctgcaggacagagaccatcagctccacagccag 180
           |||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tgggctccagactcacccctcaggatgctgcaggacagagaccatcagctccacagccag 214

                     
Query: 181 ggcacctgca 190
           ||||||||||
Sbjct: 213 ggcacctgca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 596
Length adjustment: 8
Effective length of query: 185
Effective length of database: 588
Effective search space:   108780
Effective search space used:   108780
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)