BAC Information

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BAC

Clone NameMSMg01-406E19
Chromosome6 (Build37)
Map Location 73,483,130 - 73,645,191
singlet/doubletdoublet
Overlap genenone
Upstream geneCapg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1, Tmsb10, Dnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406E19.T7 (MSMg01no406_e19.b1)MSMg01-406E19.TJ (MSMg01no406_e19.g1)
ACCAG504527AG504528
length735754
length of high quality
(start - end)		501 (74 - 574)487 (82 - 568)
definitionCHROMAT_FILE: MSMg01no406_e19.b1 PHD_FILE: MSMg01no406_e19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:33 2005CHROMAT_FILE: MSMg01no406_e19.g1 PHD_FILE: MSMg01no406_e19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,483,130 - 73,483,630)(73,644,705 - 73,645,191)
sequence
TTTTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTTGTTTGCTTTGTCTTGCTGTTTGCAAGCTACGCCGTG
ACCCCGTCTCTGAATATGCATGCTTACTGGATTATTTTCTTTGGCTTCTG
TTAATGAGAGACGCACAGTTTTAGGAGAACACAGCGACAGGGGCTCCAGT
GACTTTTCCTGTTCCAATGTGAAAGTCTACTTTTGACGAGTGCATGATTC
ATGTACTTTAGAGCTGCCTCTAGGGGGCTGAAAGTGAGAAAAAACTTATA
TGTGGCCTATTTACCTTTCTTTAGTTTGAGTTACTCCAGTCAGCATGTCA
GCTCCATCTAGGAGTCCAATCTTCAGCAATACCAGCGAAAGAAAATCACC
CCAGACAGTGGAAATGATTTGTTCCAGGCAAGAACTGGATCCTGCATGGC
CAGGTTCAGGGTCCCCCAGCTTGTTTCCTTTATCATCTGCTTTTCACCAA
AGGGGACTTAGAAAATATACAGGAAGATGTTTCAAAGCACTGAAGTCCCC
TGCAGCAAGAGCCAAGGCAGGGTCTTTCTTCCTGGCTGANAGTAGACCAT
AGAAAATAATAGCTATGACGTTTGTGCTACATTTATAGGCATGTTGGAAC
CTATGCTCAGTAAGGTTTAATAAAAATAAAGATGTTTGGTAGAGCATAAA
AACAAGTTTACCATCATTTTTTGCTTTCTCACCAG

NTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACTGTTTCAAAGATGTC
ATTGGAAGGAAGAGATGCCCTCCAAACAGCATCTTGACTTGGAGATTTCT
GCAGTCTTCAGCTGTCCTGTGATGAATTTCATAGGTTGAGAATACTGGCT
GAATTTCTGCTTTATATAAATGTAGATATTTAAGGAATTGCTATAAACTA
TTTCCCTGAAAAGAAGAAATATTGCCTTTCTATCCACATCTGACAAAATA
ATATGAGGCCCATGAGGCCAGAAGAGGAACTAAAACCACGGCAAGAACCC
CCTGATAGTAAGATTCTTCACACCAACTGGATCAGTGGGTTCATAACATG
GGAAGTCCATTTTAAAGATTAAAATGAAAAGAACCATAATGTCAAACCAC
TCACAGGTAGACTATGAACAGGTCACTAATAATTCAAACTTGGTAGTAGT
CATTACCATTTTGATCTGGGAATTATTTTGAATTAAAAATCTGCAAAGAT
ATGAATTCTGTCCTTGTCAAATTTTATTTAAGACAGCTTANATATGCAAT
TTCACTGTCCTAATAGCAAGTAACAATTTATTAAAAAAAAAAGACATAAC
ACCCAACCATGCTTAAAATGGTCTTAGAATATTTTCTAAGTACTAAAACA
TTTGAAGGTTGTACCTTTTTTAAAACCCATGAATCCCCCCCATTTATAAA
AAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_e19.b1 MSMg01no406_e19.b1 CHROMAT_FILE:
MSMg01no406_e19.b1 PHD_FILE: MSMg01no406_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:33 2005
         (501 letters)



>mm_chr6_73482930_73483830
          Length = 901

 Score =  930 bits (481), Expect = 0.0
 Identities = 496/501 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcttgctgtttgcaagctacgccgtgaccccgtctctgaatatgcatgcttactggatt 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 gtcttgctgtttgcaagctacgccatgaccccgtctctgaatatgcatgcttactggatt 260

                                                                       
Query: 61  attttctttggcttctgttaatgagagacgcacagttttaggagaacacagcgacagggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttctttggcttctgttaatgagagacgcacagttttaggagaacacagcgacagggg 320

                                                                       
Query: 121 ctccagtgacttttcctgttccaatgtgaaagtctacttttgacgagtgcatgattcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctccagtgacttttcctgttccaatgtgaaagtctacttttgacgagtgcatgattcatg 380

                                                                       
Query: 181 tactttagagctgcctctagggggctgaaagtgagaaaaaacttatatgtggcctattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactttagagctgcctctagggggctgaaagtgagaaaaaacttatatgtggcctattta 440

                                                                       
Query: 241 cctttctttagtttgagttactccagtcagcatgtcagctccatctaggagtccaatctt 300
           ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctttcaccagtttgagttactccagtcagcatgtcagctccatctaggagtccaatctt 500

                                                                       
Query: 301 cagcaataccagcgaaagaaaatcaccccagacagtggaaatgatttgttccaggcaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagcaataccagcgaaagaaaatcaccccagacagtggaaatgatttgttccaggcaaga 560

                                                                       
Query: 361 actggatcctgcatggccaggttcagggtcccccagcttgtttcctttatcatctgcttt 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 actggatcctgcatggccaggttcagggtcccccagcttgttgcctttatcatctgcttt 620

                                                                       
Query: 421 tcaccaaaggggacttagaaaatatacaggaagatgtttcaaagcactgaagtcccctgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaccaaaggggacttagaaaatatacaggaagatgtttcaaagcactgaagtcccctgc 680

                                
Query: 481 agcaagagccaaggcagggtc 501
           |||||||||||||||||||||
Sbjct: 681 agcaagagccaaggcagggtc 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no406_e19.g1 MSMg01no406_e19.g1 CHROMAT_FILE:
MSMg01no406_e19.g1 PHD_FILE: MSMg01no406_e19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:33 2005
         (487 letters)



>mm_chr6_73644505_73645391
          Length = 887

 Score =  942 bits (487), Expect = 0.0
 Identities = 487/487 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttactgtttcaaagatgtcattggaaggaagagatgccctccaaacagcatcttgacttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ttactgtttcaaagatgtcattggaaggaagagatgccctccaaacagcatcttgacttg 628

                                                                       
Query: 61  gagatttctgcagtcttcagctgtcctgtgatgaatttcataggttgagaatactggctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gagatttctgcagtcttcagctgtcctgtgatgaatttcataggttgagaatactggctg 568

                                                                       
Query: 121 aatttctgctttatataaatgtagatatttaaggaattgctataaactatttccctgaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aatttctgctttatataaatgtagatatttaaggaattgctataaactatttccctgaaa 508

                                                                       
Query: 181 agaagaaatattgcctttctatccacatctgacaaaataatatgaggcccatgaggccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 agaagaaatattgcctttctatccacatctgacaaaataatatgaggcccatgaggccag 448

                                                                       
Query: 241 aagaggaactaaaaccacggcaagaaccccctgatagtaagattcttcacaccaactgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aagaggaactaaaaccacggcaagaaccccctgatagtaagattcttcacaccaactgga 388

                                                                       
Query: 301 tcagtgggttcataacatgggaagtccattttaaagattaaaatgaaaagaaccataatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tcagtgggttcataacatgggaagtccattttaaagattaaaatgaaaagaaccataatg 328

                                                                       
Query: 361 tcaaaccactcacaggtagactatgaacaggtcactaataattcaaacttggtagtagtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tcaaaccactcacaggtagactatgaacaggtcactaataattcaaacttggtagtagtc 268

                                                                       
Query: 421 attaccattttgatctgggaattattttgaattaaaaatctgcaaagatatgaattctgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 attaccattttgatctgggaattattttgaattaaaaatctgcaaagatatgaattctgt 208

                  
Query: 481 ccttgtc 487
           |||||||
Sbjct: 207 ccttgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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