BAC Information

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BAC

Clone NameMSMg01-406H03
Chromosome6 (Build37)
Map Location 94,631,436 - 94,631,681
singlet/doubletsinglet
Overlap geneLrig1
Upstream geneMagi1, LOC100043262, LOC665856, Slc25a26
Downstream geneLOC625941, EG665865, LOC100043276, LOC100043680, Kbtbd8, LOC435912, Suclg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406H03.T7 (MSMg01no406_h03.b1)MSMg01-406H03.TJ (MSMg01no406_h03.g1)
ACCAG504639AG504640
length778787
length of high quality
(start - end)
247 (71 - 317)246 (73 - 318)
definitionCHROMAT_FILE: MSMg01no406_h03.b1 PHD_FILE: MSMg01no406_h03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:45 2005CHROMAT_FILE: MSMg01no406_h03.g1 PHD_FILE: MSMg01no406_h03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAGAAGATTTACCAGACACAAGCTATAAAAGCAAAAAGCAATGGCAGC
TCAAACATGATCAAGCTACTGAGCTAAGGAATGAAAAATGTCTTAAAAGC
ATCCAGAGAAAAATGAGAGATTGCTTACAGGGAAGAGGCAGACACGTGAC
TGCAGATTTCTTGTCAGCGTGTCATGGACTCCAGAAGGAAGCCATGGAGC
ACCAGAAAGGACTAGCAGATGAAATCCCTTCAATAATGGAGGTAAAACCA
AGATGTTTTCAGTGAATTTTATTTTAAAGGATCCATGGCCAGCAGGGTTG
CTCTAGAGGAACACGTGGGCATGGATTAGAAGGATATGACCCGAGAAGAA
AGAAATCAACCACCCAGAGGCTATACTAATCTTAAATATTTACAACTGCA
CAGCATAGTAATCAGAATGCATGAACGAACACTGATCAAATTGTGACGAA
CAATGGAAAAATTCAGAACTGTGGTTAAAGTCTTCAGCAGGCCTCCCTCA
GTTATAAGTATGTCAGCTAAACAGAAAGCTCATCCTATGTGTAGAAGAAC
TCATCTCCTCCATCCATCGACTGGATCTCAATTGATTTTTTCTAAAACTT
TCCATCAGGCTCTTTGAAACGTTATGAATCTCCTTTTTAAGTGCCTCTTG
GTAATTACTCCCCAACGACACGACTAATGTCTCTCTGCTTCTTAAATTTT
AAACACTAAATATACTGTCGCATCGTAG
ATGCTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAAGACATACACACAGACAGAGACTGGG
GAGAGGGTGCAGGGCACACACTCACAAACACCCAAGAATTAAGCATTTCA
CAAGATGTTTTTGATATTACCACATGGCAGAGGAACAACATAAAAGAAGT
TATCTCACCACAGAAATCGCCCTGGTGTTCCTTTCCCCTTAATCGGTTTA
ACACCAAATGACTCCTCGCTCCATAGCCCTTTACAGGAAGTGGTATCTTT
GTGGCAGAAAGACAAATGTTTTATTGATGTCTTGCGCAGCACTGCCTTAG
AACTGTCTGCTGGCTTGGCTCCAGCCTACAAGTTTTACTTTTCAAATCAG
ACACAATGACAACTTACTTTAGAGACCATGTTTACTGTGCTGAAAGCCAC
ACTCTAAACACAGGCTTGTCCATAGACGGCGGGCAGCTTACAGTCCAACC
TTGTTTACGCTCCCGGTAGGTTTGACAGAAAAACCACATCAAATGGTTTT
AAAAAAAATCTCCACTTGCCTGGAAGATGCTTCCTGAATGTTTTCCCTGG
CTACGCTATATCTGGCCTTGATTCTTTACCATTGGTTGGAACCAGGTTAT
TCTGCGCATCTTATTTTGTATCCTAGGCTTGAGTGGGTTTGGTCTTTTTT
CCTCATGCGCTCTGCCCCCCTCCTCGTACTCACCTCTAATAACCTTCGGA
ATTCTCCTTCTGTGGTTTATTATCTAATTACACTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_h03.g1 MSMg01no406_h03.g1 CHROMAT_FILE:
MSMg01no406_h03.g1 PHD_FILE: MSMg01no406_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:45 2005
         (246 letters)



>mm_chr6_94631236_94631881
          Length = 646

 Score =  460 bits (238), Expect = e-134
 Identities = 244/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagacatacacacagacagagactggggagagggtgcagggcacacactcacaaacacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagacatacacacagacagagactggggagagggtgcagggcacacactcacaaacacc 260

                                                                       
Query: 61  caagaattaagcatttcacaagatgtttttgatattaccacatggcagaggaacaacata 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 caagaattaagcatttcacaagatgtttttgatattaccacatggcaaaggaacaacata 320

                                                                       
Query: 121 aaagaagttatctcaccacagaaatcgccctggtgttcctttccccttaatcggtttaac 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 aaagaagttatctcaccacagaaatcgccctggtgtttctttccccttaatcggtttaac 380

                                                                       
Query: 181 accaaatgactcctcgctccatagccctttacaggaagtggtatctttgtggcagaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accaaatgactcctcgctccatagccctttacaggaagtggtatctttgtggcagaaaga 440

                 
Query: 241 caaatg 246
           ||||||
Sbjct: 441 caaatg 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)