BAC Information

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BAC

Clone NameMSMg01-406K19
Chromosome6 (Build37)
Map Location 19,375,989 - 19,376,508
singlet/doubletsinglet
Overlap genenone
Upstream geneCttnbp2, EG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406K19.T7 (MSMg01no406_k19.b1)MSMg01-406K19.TJ (MSMg01no406_k19.g1)
ACCAG504813AG504814
length725731
length of high quality
(start - end)
468 (76 - 543)520 (80 - 599)
definitionCHROMAT_FILE: MSMg01no406_k19.b1 PHD_FILE: MSMg01no406_k19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:04 2005CHROMAT_FILE: MSMg01no406_k19.g1 PHD_FILE: MSMg01no406_k19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCAATTTTGTCTCTTAGCTTAAATGTCCAACAGTGAAGTGA
TGGAACCTGAAGAGACCATCCCCATTAGATAGACACAGTTTCCAGTAGAA
AGATGGGGTGACCAACCCACTTCCAAAATTTCTAATCTAGAATGCCCAGA
ATTGTTTCTGTCTAAAAAAAAAAATGCAGGGACAAAAAGTAGAGCAGAGA
CTGAAGGAAAGGCTGTCCAGTGACTGGCCAAATGTGGGACCCATCCATGG
CCAGGCACTAAACAATGACACTATTATTGATGCTATAGCTAGCATGGCTG
TAATCTGAGAGGCTCTATCAATAGCTGGCTGAGACAAATGAAGATACTCA
CAGATAAACATTGGACTGAAGTCAAGGAAACCTATGGAAGAGTTAAGGGA
AAAAATTGAAGGAGCTGAAGGGTTTGGCAACCAACAGTGAGAAATGCCAA
CAGTGTCAACTGATCCTGACCCTGGGAGCTTCCAGAGGCTAACCCACCAA
CCAAAGAGCATACATTGGTTAATCCAAAATCCCACAGCATATATGTAGCA
GAGAACTGCCTTGTCTTGCCTCAGTTGGAGATAATTTGCCTGTAGATACC
TGCTACCCCAGGGAAAGGGGATAACCAGGGCTGGGGCATGAGAGTGGGGC
ACACTTTTAGAGGCCAACTTGAGGG
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTATTAACTTGGAGAATT
TATAAAAATCTAATGTTCTGTACTCATATTTCTTCATAATATTTCTTCAT
TTTTTAAGTTGAAGATGAAATAACATTTATTGATCTAAGTAAAAGAAATT
AGTGATAATTCAGATAGTTGTTAGGGCTGGATACTTATGTCAAAATCCAT
ATTTTTTATTTTAAATTTGTCAGTCCTGCCTCAATTTTCTTATCCATAAA
GTAATGTATATGATGGTTTCCTAAATAAAGTTAACAATATAAAAGATTAC
TTAAAATAGCTTCTCAAAATCTGGCATCAAATACTATAAATAGTACTTAA
TAGATAATTGTATTGGAAAACAAAAACAAAATATAGTAATTTAATAAAGG
TTTTTTTTTTAAATTATGTCATTTCAAGAAACATTTTGGGGAATATGATA
ACTTTTTTTTGAATTTTTTGACATCTAATAGTACAATCAAATATTTGAGT
AGCTGTTAATGAAAAGAACAGCCAGCAAGTATGACACAGATATACAGACA
TATGAACACACACATGCAAAGTAGGACACTTTTAGAACGATTTGGTTTAA
TATTGTATAGTTTTTCTCTGTTTGACAAATGGAAATCTATGGACTAATTT
AGCCTATTATTTATTGCATAAAATAAGAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_k19.g1 MSMg01no406_k19.g1 CHROMAT_FILE:
MSMg01no406_k19.g1 PHD_FILE: MSMg01no406_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:04 2005
         (520 letters)



>mm_chr6_19375789_19376708
          Length = 920

 Score =  961 bits (497), Expect = 0.0
 Identities = 515/521 (98%), Gaps = 2/521 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttattaacttggagaatttataaaaatctaatgttctgtactcatatttcttcataa 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 attttattaacttggagaatttat-aaaatctaatgttctgtactcatatttcttcataa 259

                                                                       
Query: 61  tatttcttcattttttaagttgaagatgaaataacatttattgatctaagt-aaaagaaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 260 tatttcttcattttttaagttgaagatgaaataacatttattgatctaagtaaaaaaaaa 319

                                                                       
Query: 120 ttagtgataattcagatagttgttagggctggatacttatgtcaaaatccatatttttta 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttagtgataattcagatagttgttagggctggatacttatgtcaaaatccatatttttta 379

                                                                       
Query: 180 ttttaaatttgtcagtcctgcctcaattttcttatccataaagtaatgtatatgatggtt 239
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttttaaaattgtcagtcctgcctcaattttcttatccataaagtaatgtatatgatggtt 439

                                                                       
Query: 240 tcctaaataaagttaacaatataaaagattacttaaaatagcttctcaaaatctggcatc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcctaaataaagttaacaatataaaagattacttaaaatagcttctcaaaatctggcatc 499

                                                                       
Query: 300 aaatactataaatagtacttaatagataattgtattggaaaacaaaaacaaaatatagta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 500 aaatactataaatagtacttaatagataattgtattggaaaacaaaaacaaaatacagta 559

                                                                       
Query: 360 atttaataaaggttttttttttaaattatgtcatttcaagaaacattttggggaatatga 419
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 560 atttaataaaggttttttttttaaattatgtcatttcaagaaacattttgtggaatatga 619

                                                                       
Query: 420 taacttttttttgaattttttgacatctaatagtacaatcaaatatttgagtagctgtta 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 taacttttttttgaattttttgacatctaatagtacaatcaaatatttgagtagctgtta 679

                                                    
Query: 480 atgaaaagaacagccagcaagtatgacacagatatacagac 520
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atgaaaagaacagccagcaagtatgacacagatatacagac 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)