BAC Information

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BAC

Clone NameMSMg01-407A02
Chromosome6 (Build37)
Map Location 148,619,667 - 148,620,283
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039712, LOC100039727, LOC100039736, Mlstd1, Ergic2, Tmtc1, 1110033J19Rik, EG622319, LOC100042984
Downstream geneLOC665372, Ipo8, Caprin2, EG665395, Tera, LOC667138, D030011O10Rik, 4833442J19Rik, C730024G19Rik, 2810474O19Rik, LOC665426, LOC622481, LOC665441, Bicd1, LOC667182, LOC100039850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407A02.T7 (MSMg01no407_a02.b1)MSMg01-407A02.TJ (MSMg01no407_a02.g1)
ACCAG505066AG505067
length747811
length of high quality
(start - end)
621 (43 - 663)170 (76 - 245)
definitionCHROMAT_FILE: MSMg01no407_a02.b1 PHD_FILE: MSMg01no407_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:31 2005CHROMAT_FILE: MSMg01no407_a02.g1 PHD_FILE: MSMg01no407_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGGTCCTTATGCTTACAAGGCAAGTACTTTACTGACTGAGCCATCTCT
GCAACTTCATATGTGTTTGTTTAAGATAGAGGAAGAGGGGAGGCCCACAT
AGGGAAAAAAGAAGGCACTATGTCCACAGAGGCAGAGACTGAGCAATATG
ATCACACATCAAGGACCCCACCAATCTTCAAAAGCTAAGAGATGCCAGGA
ATGGCTCACTGAAGTCCCTGGAAGGGTCAATTCTGTGTCAATGCCTAACT
CCAGTCTTAGCCACGTTTGCAGACTTCTCGTCTCTGGCTGTGTGAGAAAA
GAAACAAGTCTGACACACAACTCCAGGTGTGTGTGTGGGTTTGTCACAGT
ATCTCTAGGAACTAAATACACTCTAAAATCAAGCTGTCTTCCTCTACTTA
GTTTAAAGTAGTTTCATATTTTCTGGACATAGGGTCTCTGAACAATTGTT
TACCTTGGACTACCCTATGGGCATATCTGTGGAGGACTGTCTTAATAAGT
TAACTAATGAGAAGACCTTGCTATCTGTGGGAAGCACCATTCCCTAGGCA
TGTACTAGAGGGTTCCTGTAAAATAGAAGAGAAACCATGCATTGATTTTC
TCTGCGCTTGACTGTGGATGTATGGCCGGATGTATGGCCAGGTGTCTCAA
GTTTCTGATAACTGTGACTTCTCCATAATGATGGATTAGAACCTGGN
AAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCTGTGAGGCAGAGAGATAAAACA
GGAGAAAACAAATCAAGCAAAAAAAAAAAAAAAAAAGAAAAAAAAAGAAA
AAAGAAAGAAATCAATTTGAAATATTGGTCTTTGCTGCTGGACTTCAAGC
CACTGACACACAGAAGCATAAATAGCTTATGGAAAGTAGAAATNNAAAAC
CTCTAGAAGCTNAATCTAAAATGGTGAATTAGTCCTGCTTTCTGGATCAC
CTCGCCTGCTCAGAAAATGCTTAGCTCANGGGGGATTAACAAACAAAAAT
TTAAATATTTTTCTTTGAAGAACCCAAGTGAAAGGAAGGGTGGCTTTTTG
CCTTCCCCCAAGAAAAGGAAAAATGGAAAAAATTGGTTAAAAAAATGGGG
AAAAAACCATAAAGAAAAAGTTCCGGGGGGGGGAAAAACACCCGGTTGGG
GGAAAATTTAAAAAAAGGGAAAGGGGGCACCCCCAAAAATGGAGGGGGAA
ATTCCCCCCCCNNCCCNNNNNNNNNNNNAAGCCAGCCTAAAGNAGAGCCC
CCGGGGCCCNNTGTGGGCCCAAATTTTTGGGGGGGACCAAAAAAACGGGG
GGAAAAAAAAAAAAAATTTAAAGGGTGCCCAAAAAAAAAAATAAGACTTT
TAAAAAAAAAAATACCACCCTCCTGAAAAAAAAAACACAAAAAAGCGTGG
AAGAGTCTATAAAAGAAACACAGCCTCCTTAAAAAAAAAAAAAAACANTC
TTTTTACTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_a02.b1 MSMg01no407_a02.b1 CHROMAT_FILE:
MSMg01no407_a02.b1 PHD_FILE: MSMg01no407_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:31 2005
         (621 letters)



>mm_chr6_148619551_148620571
          Length = 1021

 Score = 1178 bits (609), Expect = 0.0
 Identities = 615/617 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaggtccttatgcttacaaggcaagtactttactgactgagccatctctgcaact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gaattcaggtccttatgcttacaaggcaagtactttactgactgagccatctctgcaact 674

                                                                       
Query: 65  tcatatgtgtttgtttaagatagaggaagaggggaggcccacatagggaaaaaagaaggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tcatatgtgtttgtttaagatagaggaagaggggaggcccacatagggaaaaaagaaggc 614

                                                                       
Query: 125 actatgtccacagaggcagagactgagcaatatgatcacacatcaaggaccccaccaatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 actatgtccacagaggcagagactgagcaatatgatcacacatcaaggaccccaccaatc 554

                                                                       
Query: 185 ttcaaaagctaagagatgccaggaatggctcactgaagtccctggaagggtcaattctgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ttcaaaagctaagagatgccaggaatggctcactgaagtccctggaagggtcaattctgt 494

                                                                       
Query: 245 gtcaatgcctaactccagtcttagccacgtttgcagacttctcgtctctggctgtgtgag 304
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 493 gtcaatgcctaactccagtcttagccacgtttgcagacttcttgtctctggctgtgtgag 434

                                                                       
Query: 305 aaaagaaacaagtctgacacacaactccaggtgtgtgtgtgggtttgtcacagtatctct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aaaagaaacaagtctgacacacaactccaggtgtgtgtgtgggtttgtcacagtatctct 374

                                                                       
Query: 365 aggaactaaatacactctaaaatcaagctgtcttcctctacttagtttaaagtagtttca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aggaactaaatacactctaaaatcaagctgtcttcctctacttagtttaaagtagtttca 314

                                                                       
Query: 425 tattttctggacatagggtctctgaacaattgtttaccttggactaccctatgggcatat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tattttctggacatagggtctctgaacaattgtttaccttggactaccctatgggcatat 254

                                                                       
Query: 485 ctgtggaggactgtcttaataagttaactaatgagaagaccttgctatctgtgggaagca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ctgtggaggactgtcttaataagttaactaatgagaagaccttgctatctgtgggaagca 194

                                                                       
Query: 545 ccattccctaggcatgtactagagggttcctgtaaaatagaagagaaaccatgcattgat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ccattccctaggcatgtactagagggttcctgtaaaatagaagagaaaccatgcattgat 134

                            
Query: 605 tttctctgcgcttgact 621
           |||||||| ||||||||
Sbjct: 133 tttctctgtgcttgact 117


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)