BAC Information

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BAC

Clone NameMSMg01-407D13
Chromosome6 (Build37)
Map Location 125,158,438 - 125,159,067
singlet/doubletsinglet
Overlap genenone
Upstream geneVmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51
Downstream geneVamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b, Ntf3, LOC100043565
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407D13.T7 (MSMg01no407_d13.b1)MSMg01-407D13.TJ (MSMg01no407_d13.g1)
ACCAG505232AG505233
length746785
length of high quality
(start - end)		627 (44 - 670)171 (72 - 242)
definitionCHROMAT_FILE: MSMg01no407_d13.b1 PHD_FILE: MSMg01no407_d13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:48 2005CHROMAT_FILE: MSMg01no407_d13.g1 PHD_FILE: MSMg01no407_d13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTTGGTCATTATATCCTCAAAAGATGTGCCAGTGACGGCCCGATGG
ACTTGGCGGTGGCTTCTTTCCTTCTGAATTTCTTCCAACTGTTCTTTTTT
TTTTTTATTTTTTTATCCTGTAGAGGACAGTCCAATTTATCTGCCAAGGA
TTCCTTTTAGAAAAGACATGTGCACTTGCATTTTGCGTTCAGAAACTGGG
AAACCTCCTGGTCAGTCCTGGTGTAGTTCTGTCCTTGTTTGGGGTAGATC
TTGTATCTGCTGAAACCTTCATGGTGAGAGCTGCCTGCTGGTGGGAGGAA
AGACCCAGGGAGGGCGAGAGAGTCATGGGAGAATGCCTTCCTTATAGGGC
AGTAGGAGAGATTAAAACTCTTTTACAGGGACGTAATTTATGCATCATAC
AATTCACTGACTTTGGAAACTTTTTGTCTGTTTAGAGTTGTGTGCCTATC
ACCATAATTGACTTTAGATATTTTCCTTTTCCCCATTAATTTATTTACTC
ACTTTACATCTGGACCACAGCCCCCAAGTTTTGATATTTCCATCATCTCT
CCCTCAGCCATTATTTCCAGTTATCCCAGTTAACCCTCCCAGAACTGAAC
ACCTACTGCTGTCTGCTTTTTTATGTATTGTGAATATTTCATGGAAGTTT
ATCATAAATACATGACTACTTGGGACTAGAAGTTCTTAGGAGCTGT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCACAGCCCTGCTTTCTGGGATGCCCCTG
CTTTTCCTATATTTCCCATTTGCATTAGACCCTCAGCAAACCACAGGTCC
CTGGCTCCCCTGGTGCCACAGGGTTGGGGTTGGGGTTGGGGGATAGAGGG
ACTCCCTAGGATCTTCCAGGCCACTGTCAGGCTCTGCTCCTCCTTTTTAG
CCCTGTCCCTTCCTGTCTGTGACAGATGTCTATTACTGAGTTCTGCTCAC
TCCTCCAGTTTTTTTTTTTTACCCTGCTTGGAAATGTCCCCAACCTGATT
ATATTCTTCCGAAGATCTTGGGAGGAGGTGTTGGAGACCTTCCTGTATAA
TCTTCACACCTTCTGGTCAAATATTTGAATACTGACTCGATTCACAATGT
GGCTTTCTTGTTTGCTGATTATCGTACTGTTCCCTGAAATGAAGAATGAT
TCTTGATATGACTATTATCATTAACGTGCTGCTGAATTTATAACAGTATG
TAGAAAGAAAAACGTTTCCTCTAATACTATATTAAATTATCAATACCCGT
GTTAGATTTTTATGTGGTTTGTGCGTTGTTTTCTTTTATTTTATGCACCC
GGTACAATCTAGTCCTGCCCGGATTGTTTTTTTTTATTCACCCGCGACCC
AACTTCCCGCACCGCTTGATCTTTTCTTTCTGTTTCATACATTAACCAAT
TCCCCCTACATTCTCGTATTTAAAACCACCCCGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_d13.b1 MSMg01no407_d13.b1 CHROMAT_FILE:
MSMg01no407_d13.b1 PHD_FILE: MSMg01no407_d13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:48 2005
         (627 letters)



>mm_chr6_125158241_125159267
          Length = 1027

 Score = 1164 bits (602), Expect = 0.0
 Identities = 620/630 (98%), Gaps = 7/630 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttggtcattatatcctcaaaagatgtgccagtgacggcccgatggacttggc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gaattcttttggtcattatatcctcaaaagatgtgccagtgacggcccgatggacttggc 257

                                                                       
Query: 65  ggtggcttctttccttctgaatttcttccaactgttc-------ttttttttttttattt 117
           |||||||||||||||||||||||||||||||||||||       |||||||||||| |||
Sbjct: 258 ggtggcttctttccttctgaatttcttccaactgttcttttttttttttttttttttttt 317

                                                                       
Query: 118 ttttatcctgtagaggacagtccaatttatctgccaaggattccttttagaaaagacatg 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttttatcctgtagaggacagtccaatttatctgccaaggattccttttagaaaagacatg 377

                                                                       
Query: 178 tgcacttgcattttgcgttcagaaactgggaaacctcctggtcagtcctggtgtagttct 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tgcacttgcattttgcgttcagaaactgggaaacctcctggtcagtcctggtgtagttct 437

                                                                       
Query: 238 gtccttgtttggggtagatcttgtatctgctgaaaccttcatggtgagagctgcctgctg 297
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 438 gtccttgtttggggtagatcttgtatctgctgaaaccctcatggtgagagctgcctgctg 497

                                                                       
Query: 298 gtgggaggaaagacccagggagggcgagagagtcatgggagaatgccttccttatagggc 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gtgggaggaaagacccagggagggcgagagagtcatgggagaatgccttccttatagggc 557

                                                                       
Query: 358 agtaggagagattaaaactcttttacagggacgtaatttatgcatcatacaattcactga 417
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agtaggagagatcaaaactcttttacagggacgtaatttatgcatcatacaattcactga 617

                                                                       
Query: 418 ctttggaaactttttgtctgtttagagttgtgtgcctatcaccataattgactttagata 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctttggaaactttttgtctgtttagagttgtgtgcctatcaccataattgactttagata 677

                                                                       
Query: 478 ttttccttttccccattaatttatttactcactttacatctggaccacagcccccaagtt 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ttttccttttccccattaatttatttactcactttacatctggaccacagcccccaagtt 737

                                                                       
Query: 538 ttgatatttccatcatctctccctcagccattatttccagttatcccagttaaccctccc 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ttgatatttccatcatctctccctcagccattatttccagttatcccagttaaccctccc 797

                                         
Query: 598 agaactgaacacctactgctgtctgctttt 627
           ||||||||||||||||||||||||||||||
Sbjct: 798 agaactgaacacctactgctgtctgctttt 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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