Query= MSMg01no407_f05.b1 MSMg01no407_f05.b1 CHROMAT_FILE:
MSMg01no407_f05.b1 PHD_FILE: MSMg01no407_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:56 2005
(698 letters)
>mm_chr6_13561843_13562939
Length = 1097
Score = 1288 bits (666), Expect = 0.0
Identities = 687/694 (98%), Gaps = 1/694 (0%)
Strand = Plus / Plus
Query: 5 gaattccacacccctaagccccttaccccataaaaacccctagctttcgagcctcatggc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacacccctaagccccttaccccataaaaacccctagctttcgagcctcatggc 264
Query: 65 tgacatccgttatctcctgtgtgggatgcatgtcggtccggagctccgtcattaaacgac 124
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 265 cgacatccgttatctcctgtgtgggatgcatgtcggtccggagctctgtcattaaacgac 324
Query: 125 ctcatgtaattacatcaagatggtcctttgtgattttttgggtgcaccccgaatcgggaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcatgtaattacatcaagatggtcctttgtgattttttgggtgcaccccgaatcgggaa 384
Query: 185 ttgagtgggggtttccctactaggttctatcagaccctctgccttgtcaccttgtttctt 244
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgagtgggggtttccccactaggttctatcagaccctctgccttgtcaccttgtttctt 444
Query: 245 gatgataattatcatttctgtatattttaaaatattttgcatttaaaggttcaaaaacct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gatgataattatcatttctgtatattttaaaatattttgcatttaaaggttcaaaaacct 504
Query: 305 ttaatctgtacaatcaacggcagttaatttggatagtcgggtgcatgcgtactttttcaa 364
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 505 ttaatctgtacaatcaaaggcagttaatttggatagtcgggtgcatgcatactttttcaa 564
Query: 365 tgtcatgatgtaaaatcagactacaagtatattaattaacacgaagggttacaagggatt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtcatgatgtaaaatcagactacaagtatattaattaacacgaagggttacaagggatt 624
Query: 425 tttttttttaactgtggaaatgaaaagtgtttaagaaaatgcctggctatcatatcacaa 484
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttttttt-aactgtggaaatgaaaagtgtttaagaaaatgcctggctatcatatcacaa 683
Query: 485 aggcagttcttcttttccaagaatcaaagccctcccctcaaggcttgggagtctgcaagg 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 684 aggcagttcttcttttccaagaatcaaagccctcccctcaaggcttgggagtctgcaaag 743
Query: 545 aagagaaggtggaaagactgtgaagcagaggtgatgatagatgacaccaaggaaatgtgt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aagagaaggtggaaagactgtgaagcagaggtgatgatagatgacaccaaggaaatgtgt 803
Query: 605 ctttcagacaccatgttttagcgttactgatgaaccaactcatagagactgtggcagcac 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ctttcagacaccatgttttagcgttactgatgaaccaactcatagagactgtggcagcac 863
Query: 665 acgcaagagccacacaggtacaacaagccagaca 698
||||||||||||||||||||||||||||||||||
Sbjct: 864 acgcaagagccacacaggtacaacaagccagaca 897
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1097
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1087
Effective search space: 747856
Effective search space used: 747856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_f05.g1 MSMg01no407_f05.g1 CHROMAT_FILE:
MSMg01no407_f05.g1 PHD_FILE: MSMg01no407_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:56 2005
(395 letters)
>mm_chr6_13708971_13709768
Length = 798
Score = 611 bits (316), Expect = e-179
Identities = 371/398 (93%), Gaps = 17/398 (4%)
Strand = Plus / Minus
Query: 1 acatgacttcttctggtggcaaatgtagcagtttggttttttttgtgtttgtttgggttt 60
|||||||| | ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 665 acatgactccctctggtggcaaatgtagcagttt--ctttttttgtgtttgtttg----- 613
Query: 61 tttttgtttgtttgtttgttttttgagagagagagaactattaatgcaaagctaatgaat 120
||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 612 -ttttgtt------tttgttttttgagagagagagaactattgatgcaaagctaatgaat 560
Query: 121 ttggggggggg---gtaggagactgtctcttccctcttaaaattactcacaatccagtgt 177
| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 559 tggggggggggggtgtaggagactgtctcttccctcttaaaactactcacaatccagtgt 500
Query: 178 aatcattggaagttgtgacaaactatcaatggagtcaatacagagataaataaattcctt 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aatcattggaagttgcgacaaactatcaatggagtcaatacagagataaataaattcctt 440
Query: 238 catcaaaaaatcattctggaagatatcaaattgtttatacattcttttaacagtcaaaca 297
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 439 cattaaaaaatcattctggaagatatcaaattgtttatacattcttttaacagtcaaaga 380
Query: 298 agaattcaagcaattaattaatgaaaataatttcctcaaacctgatcttaaaccctcttt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agaattcaagcaattaattaatgaaaataatttcctcaaacctgatcttaaaccctcttt 320
Query: 358 acaaagttcatttataatcaaatataagattgtctaag 395
|||||||||| |||||||||||||||||||||||||||
Sbjct: 319 acaaagttcacttataatcaaatataagattgtctaag 282
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 798
Length adjustment: 9
Effective length of query: 386
Effective length of database: 789
Effective search space: 304554
Effective search space used: 304554
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
