Query= MSMg01no407_i02.b1 MSMg01no407_i02.b1 CHROMAT_FILE:
MSMg01no407_i02.b1 PHD_FILE: MSMg01no407_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:10 2005
(593 letters)
>mm_chr6_20003683_20004678
Length = 996
Score = 1077 bits (557), Expect = 0.0
Identities = 583/592 (98%), Gaps = 3/592 (0%)
Strand = Plus / Minus
Query: 5 gaattctctatcagaaaagttgatgatgttattaattcttatttgaaagccagattttct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gaattctctatcagaaaagttgatgatgttattaattcttatttgaaagccagattttct 737
Query: 65 caagttttagacaaattattaagcacaatacaagaactattttgctctctcaatgatcct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 caagttttagacaaattattaagcacaatacaagaactattttgctctctcaatgatcct 677
Query: 125 ttaaagaacaaatctttgtccaggacatgtagtctaggaaggtatagcaaagtacctaca 184
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ttaaagaacaaatcttggtccaggacatgtagtctaggaaggtatagcaaagtacctaca 617
Query: 185 gagacaagaatgaatacatagtaaagtgaagctaaatttaatgagtcacccagtatatcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gagacaagaatgaatacatagtaaagtgaagctaaatttaatgagtcacccagtatatcc 557
Query: 245 taaataatttgttaatattttaatcattatgttcttctctcaactcttgaattttt-aaa 303
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 556 taaataatttgttaatattttaatcattatgttattctctcaactcttgaatttttaaaa 497
Query: 304 aaatgattattttaatggagttttccatctatggaattataggatcacttatatactgta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaatgattattttaatggagttttccatctatggaattataggatcacttatatactgta 437
Query: 364 gaaggctgtgaagagaatcatcttttaaaggcatacaaagtagaaattaccatttaaagt 423
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 436 gaaggctgtgaagagaatcatcttttaaaggaatacaaagtagaaattaccatttaaagt 377
Query: 424 ctcaaaaaaaaca-cacacaaaacatcagttaatctggtttttattaaagtaagaacatc 482
||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 376 ctcaaaaaaaaaaccacacaaaacatcagttaatctggtttctattaaagtaagaacatc 317
Query: 483 cattagaattcttctaaattctgaatatttctttggaacacttcttcatcttgcatcctg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 cattagaattcttctaaattctgaatatttctttggaacacttcttcatcttgcatcctg 257
Query: 543 gctctttattttcatgtatctccactggntgttttt-aaaatttggggacag 593
|||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 256 gctctttattttcatgtatctccactggttgtttttaaaaatttggggacag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 996
Length adjustment: 10
Effective length of query: 583
Effective length of database: 986
Effective search space: 574838
Effective search space used: 574838
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_i02.g1 MSMg01no407_i02.g1 CHROMAT_FILE:
MSMg01no407_i02.g1 PHD_FILE: MSMg01no407_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:10 2005
(538 letters)
>mm_chr6_19765630_19766566
Length = 937
Score = 994 bits (514), Expect = 0.0
Identities = 532/538 (98%), Gaps = 2/538 (0%)
Strand = Plus / Plus
Query: 1 agcacaattgacttacccttatacttattgaacaaaaacctgaatcatttaagattttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcacaattgacttacccttatacttattgaacaaaaacctgaatcatttaagattttgt 260
Query: 61 tcattgtgaacaaagctactatgcactcccattgacaggttttggctcagaaagttttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcattgtgaacaaagctactatgcactcccattgacaggttttggctcagaaagttttaa 320
Query: 121 aactgaaagataaataaggaaggaaatctaaacactatttaggagtatataataaatatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactgaaagataaataaggaaggaaatctaaacactatttaggagtatataataaatatg 380
Query: 181 tgagcagaggtaacaataattcccatatgatatttcaagtcatttattgtcacattgcaa 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagcagaggtaacaataattccc-tatgatatttcaagtcatttattgtcacattgcaa 439
Query: 241 aaaatatatttttttcaaaataaaattgcaaccacaaaactatataacatatatttatac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaaatatatttttttcaaaataaaattgcaaccacaaaactatataacatatatttatac 499
Query: 301 tggagaagtgtaaataactgaagatcattttatatatttggtagttttaaaaaatgtata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tggagaagtgtaaataactgaagatcattttatatatttggtagttttaaaaaatgtata 559
Query: 361 taagtattttttctattaaaaatgagtctagtattcttttagtttttatttttatttccc 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taagtattttt-ctattaaaaatgagtctagtattcttttagtttttatttttatttccc 618
Query: 421 actgcaagaggttttctatagtacacccccaactcccccctattccaactgtgatctcct 480
||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||
Sbjct: 619 actgcaagaggttttctatagtacatccccaacgcccccctattccaactgtggtctcct 678
Query: 481 catagcctcttcctccatatttatctctgcctcataatccctctaatcccattctatt 538
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 679 catagcctcttcctccatacttatctctgcctcataatccctctaatcccattctatt 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 937
Length adjustment: 10
Effective length of query: 528
Effective length of database: 927
Effective search space: 489456
Effective search space used: 489456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
