Query= MSMg01no407_p13.b1 MSMg01no407_p13.b1 CHROMAT_FILE:
MSMg01no407_p13.b1 PHD_FILE: MSMg01no407_p13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:47 2005
(552 letters)
>mm_chr6_128536690_128537641
Length = 952
Score = 748 bits (387), Expect = 0.0
Identities = 439/459 (95%), Gaps = 7/459 (1%)
Strand = Plus / Minus
Query: 4 ggaattcatatctctccctagttttgaaccgacaaataagtccacactctatgggtggct 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ggaattcatatctctaagtagttttgaaccgacaaataagtccacactctatgggtggct 394
Query: 64 gaggctcagtctgtgtttcttccagtttgtagctttttgcagaggtggttttgaaaataa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gaggctcagtctgtgtttcttccagtttgtagctttttgcagaggtggttttgaaaataa 334
Query: 124 actgcacgttatgtttttatgactcacccactcacccacatcatttctccagcttgtgta 183
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 333 actgcacgttatgtttttatgactcacccactcatccacatcatttctccagcttgtgta 274
Query: 184 tccatcactccaagcacttggtattttctctagcataaagccaaaagttaaaatgtctcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tccatcactccaagcacttggtattttctctagcataaagccaaaagttaaaatgtctcc 214
Query: 244 actggcagt-gtgtgtggaggggtcccccttctcagaggagaaggggaagggggtggggt 302
||||||||| | |||||| |||||||||||| |||||||||||||||||| |||||
Sbjct: 213 actggcagtggggtgtgg-ggggtcccccttttcagaggagaaggggaag-----ggggt 160
Query: 303 agacaggagctgtgtgtgaggggggaactgggaggagggctgcggtcaggatgtaaagtg 362
||| | ||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 159 agagaagagctgtgtgtgaggagggaactgggaggagggctgcaatcaggatgtaaagtg 100
Query: 363 aataaataaataagttaatagaaaaaaatgtctccactgatggattgttggtcatcttca 422
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 99 aataaataaataagttaatagaaaaaaatgtctccattgatggattgttggtcatcttca 40
Query: 423 ataagagtccattccacgtttatttgtctgcctgggtgg 461
||||||||||||||||| |||||||||||||||||||||
Sbjct: 39 ataagagtccattccacatttatttgtctgcctgggtgg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_p13.g1 MSMg01no407_p13.g1 CHROMAT_FILE:
MSMg01no407_p13.g1 PHD_FILE: MSMg01no407_p13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:47 2005
(535 letters)
>mm_chr6_128349118_128350052
Length = 935
Score = 957 bits (495), Expect = 0.0
Identities = 524/535 (97%), Gaps = 3/535 (0%)
Strand = Plus / Plus
Query: 1 ctcatcatggaatcactgggacttcagcgtctaacaaggaagatctcagaggtgagtatt 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 ctcatcatggaatcactgggacttcagcgtctaacagggaagatctcagaggtgagtatt 260
Query: 61 actagaacgttcctgatctctttgcaattcgagagagatattgggactgacagggagagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actagaacgttcctgatctctttgcaattcgagagagatattgggactgacagggagagg 320
Query: 121 ccaagcaaggagggtggctgatggcagatggaggagaggtggggaggccactctcatact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaagcaaggagggtggctgatggcagatggaggagaggtggggaggccactctcatact 380
Query: 181 gtccctctctggccagcacctcaaaccctagcagcaaaggacagcagcatgagaaaagag 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 gtccctctctggccagcacctcaaaccctagtagcaaaggacagcagcatgagaaaagag 440
Query: 241 ctggttggttgactgttcagagactggaaggggacagcagagccggtccacaaaacacaa 300
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgggtggctgactgttcagagactggaaggggacagcagagccggtccacaaaacacaa 500
Query: 301 gagacaagggacatgcatgcctgcctccccacacataccaaacatgcgcccccacacaat 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 gagacaagggacatgcatgcctgcttccccacacataccaaacatgcgcccccacacaat 560
Query: 361 ggcactcacctctctctgatgacttggcacagcctcctgacagtttacaacacccgcgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggcactcacctctctctgatgacttggcacagcctcctgacagtttacaacacccgcgtg 620
Query: 421 cgcgcgcacacacacacacacacacacacacacacacacacacacacacacacacacaca 480
||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cgcgcgcgcgcgcacacacacacacacacacacacacacacacacacacacacacacaca 680
Query: 481 cacacaccatccaccacccactctgagcaggaccccagagctgcaggctttgcag 535
|| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ca---accatccaccacccactctgagcaggaccccagagctgcaggctttgcag 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 77
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
