BAC Information

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BAC

Clone NameMSMg01-409A17
Chromosome6 (Build37)
Map Location 88,870,879 - 88,871,497
singlet/doubletsinglet
Overlap genenone
Upstream gene8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175
Downstream gene4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1, Chchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409A17.T7 (MSMg01no409_a17.b1)MSMg01-409A17.TJ (MSMg01no409_a17.g1)
ACCAG506622AG506623
length7731,742
length of high quality
(start - end)
629 (41 - 669)---
definitionCHROMAT_FILE: MSMg01no409_a17.b1 PHD_FILE: MSMg01no409_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:15 2005CHROMAT_FILE: MSMg01no409_a17.g1 PHD_FILE: MSMg01no409_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCG
GAATTCATGGCTGTCCAGATACTAGCTGGGCCACACTGACTTCAAGAAGA
GAGTCTGAGATCCAGGCTAGCACAGGGCCCCATGATGTCATCTTTGACCT
AGGCCCCTCGGTGATGTACTGTCCTAAGCCCCACTTCTCTTTCACAGGAT
GGTGGCTCCAACTGTCTAGTCCTACAGAGTGTCTCCCTGGTACCACTGTC
ACCCTGTGTGTGTGAGAAGGGTGCTTCATACCTTACATTTGCCTCATTGG
TCAAACATTGCTAGAAGTGTCACCTCTCTACGATGGCAGCTGGACCTGTC
TGGCTTCCTTTGGGGGACTGCTACTTTTCATAAATGAATAAGAAAGAAAA
GAGATGGATATTAAGCAGGCAGCTGTCAGGTGGCTGTCAGGACTGAAATA
GTAACAAATGGGCTCAGAGGCTGGTGTGGTTCACTCCATCCCTGGCTGAA
GCCATTGCTTTGGGGATGAAGCATCATGGGTACAGTGGAAATCCCCTTTG
TCCATCCATTCTTTCCCAATCTGGTCCCACAGCAGGCAACTGAACTTTGT
GCTTGCTTCTGCGCTCCCCTGCCTCTGTCTCTGTCTCTGTCTCTGTCTCT
GTCTCTGTCTCTGTCTCTCTTTCCCCGTTTCTCTCTGTCTCTCTCTCTGT
CTCTGTCTGAGCCTCTCTCACTGGTTCTCTCTGTGGCCCTGTCCGTGGGT
GGACATGTAAACATCAGGACCTN
TTACCATCTACTCTACATTATTCATCCCCTAATTACTCTCTGCTCGCTTC
CTCCTTTGCACCTCCCCCTCTCCTTCACCCCACATATATTACGAGGGAGA
TATGTCTCCTCGGCCNGGGAGACGACCGTGGTGCCTGCCCTTCATCAATT
GTAGATGTGGGAGTACATATCTTGTAAACGGTATACTCTGCCGTGCTAAT
GTCCATTGCTGGGTGTGACTCAGGGCGCGGTATCGCTGCTCACGTGTACG
GTGACGTGCTAGAGCCTCTCGTTGAGTTTGTGCATTTACTATGAGCTTGT
ACGCGCATATGATTTGACATACTACAATGTAATTATTATACTCAATGTAT
TCTACCTATCATAATATGACACACAGCACACTCGACATCGACCACATCCA
CTCGAACTATATGGCTGTGACACTGATCATATATGTGTGTCTCATACGCT
ATCTTCGACTCTCATCTCCTCTCTTCATCATCGCTTCTCCTCTCTCATGA
CGTCGCGCTCTTATCCGTCATATCTCACCGTCATCCTGTAAGCCTGCGCA
CACATCTACATCTTTCACACTACTTCGCCACAGACTTATACTTACCACAA
TCTCTACCAATCCTCGACAATATTGCATGACGCTCGATACGATATTACTA
CACACATAGTAGTATTTACGAATTGACGATAGCAGGTTATATCGNGTCGA
GGCCGCCGCGATCGTGGCTGCCGTGTATAGCGCTGTCATTATTACGCGCC
TAACGCTCTACTGTCTGTCTGGTTGATTCTATGATGTCACTACACTACGT
GGCACCCGGTCGCGATGTCGACGATTCTTCCGTGGTTAGTCTCTGGGTCG
CTGCTGGTCAGACATACGCGCTATCGCTCCGCGCATANTATTACGCTCCT
GCTGTTGTCATACTCTCTGAGCCACGACGTACTCGCGCCTCACTCGAATN
GTGAGNAGTGTGCGCGTCTCTAACTCTTGCTATTAGCTGCATCCTATCTA
TACATTATTGTCCAGCACTCTAGCACATCGAATCGGCTGATCTTCACGAT
CTCACGCGCGTCGGCCGCTATGCTCTCGACGTAGCCTGTATGTCGGTGAC
TTCATACTCGTACGCGGATCATCCTCTCCTCCTGATCTACTCANCTCTAC
GCGTGTCCTCGTCAGGTATACTCGGATGGCTCACGCGCCGTCTGACGATT
GGCGACTCAGATGTCGCCGCTGTTGTCGTGTGTGTTCATGACTCGCGGTG
TGTTGTCGTCTTTTAGCACTTCGTTGGACGTGTCGTGTCTATCTCTGCAG
TGANCTCGTCGCTCTGGCGACTCTACTACATATCTCCACTCATATTCATC
ATATATCTGATATATACTAACAGTGACTATGACTACTAGATCTACACCTA
TACATAGTAGTCTCGGATGTGTNGATGTCAGCTCCGANTCGATCGAGCGC
GCAATAGACGTGCTGACACATGACACTCTCACATGCACATCGTNTCTGCT
TCCTATCACTCTCACAGCTATCAGAGCGCGGCGACGATCACGCCGACCTG
TGACGACGACTGCAGATGGGACTGAGANATCGTCATCGCCGTGCTGTGAC
TNGTCGTACTGCATTGAGTGTCTAGTGTGCACGACTCCAACCCGACCGTA
TCAGTCGTCATGATGGTGACCGTAACATGGGCGCAGCAGACGCGAGAGCA
TCGCTCCCACTGTGACATCGCNTCTCATGNCAACTCATCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_a17.b1 MSMg01no409_a17.b1 CHROMAT_FILE:
MSMg01no409_a17.b1 PHD_FILE: MSMg01no409_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:15 2005
         (629 letters)



>mm_chr6_88870669_88871698
          Length = 1030

 Score = 1116 bits (577), Expect = 0.0
 Identities = 609/621 (98%), Gaps = 5/621 (0%)
 Strand = Plus / Plus

                                                                       
Query: 11  gaattcatggct--gtccagatactagctgggccacactgacttcaagaagagagtctga 68
           ||||||||||||  ||  ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 211 gaattcatggctgagt--agatactagctgggcgacactgacttcaagaagagagtctga 268

                                                                       
Query: 69  gatccaggctagcacagggccccatgatgtcatctttgacctaggcccctcggtgatgta 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gatccaggctagcacagggccccatgatgtcatctttgacctaggcccctcggtgatgta 328

                                                                       
Query: 129 ctgtcctaagccccacttctctttcacaggatggtggctccaactgtctagtcctacaga 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctgtcctaagccccacttctctttcacaggatggtggctccaactgtctagtcctacaga 388

                                                                       
Query: 189 gtgtctccctggtaccactgtcaccctgtgtgtgtgagaagggtgcttcataccttacat 248
           |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 389 gtgtctccctggtaccactgtcaccctgtgtgtgtgagaagggtgcctcatatcttacat 448

                                                                       
Query: 249 ttgcctcattggtcaaacattgctagaagtgtcacctctctacgatggcagctggacctg 308
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 449 ttgcctcattggtcaaacattgctagaagtgtcacctctctatgatggcagctggacctg 508

                                                                       
Query: 309 tctggcttcctttgggggactgctacttttcataaatgaataagaaagaaaagagatgga 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tctggcttcctttgggggactgctacttttcataaatgaataagaaagaaaagagatgga 568

                                                                       
Query: 369 tattaagcaggcagctgtcaggtggctgtcaggactgaaa-tagtaacaaatgggctcag 427
           ||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||
Sbjct: 569 tattaagcaggcagctggcaggtggctgtcaggactgaaaatggtaacaaatgggctcag 628

                                                                       
Query: 428 aggctggtgtggttcactccatccctggctgaagccattgctttggggatgaagcatcat 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 aggctggtgtggttcactccatccctggctgaagccattgctttggggatgaagcatcat 688

                                                                       
Query: 488 gggtacagtggaaatcccctttgtccatccattctttcccaatctggtcccacagcaggc 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gggtacagtggaaatcccctttgtccatccattctttcccaatctggtcccacagcaggc 748

                                                                       
Query: 548 aactgaactttgtgcttgcttctgcgctcccctgcctctgtctctgtctctgtctctgtc 607
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 749 aactgaactttgtgcttgcttctgcgctcccctgcctctgtctctgtctttgtctctgtc 808

                                
Query: 608 tctgtctctgtctctgtctct 628
           |||||||||||||||||||||
Sbjct: 809 tctgtctctgtctctgtctct 829


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1030
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1020
Effective search space:   631380
Effective search space used:   631380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)