BAC Information

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BAC

Clone NameMSMg01-409B21
Chromosome6 (Build37)
Map Location 84,214,162 - 84,252,801
singlet/doubletdoublet
Overlap genenone
Upstream geneC330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114
Downstream gene4930504D19Rik, Cyp26b1, Exoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409B21.T7 (MSMg01no409_b21.b1)MSMg01-409B21.TJ (MSMg01no409_b21.g1)
ACCAG506678AG506679
length777756
length of high quality
(start - end)		486 (49 - 534)356 (77 - 432)
definitionCHROMAT_FILE: MSMg01no409_b21.b1 PHD_FILE: MSMg01no409_b21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:21 2005CHROMAT_FILE: MSMg01no409_b21.g1 PHD_FILE: MSMg01no409_b21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,252,410 - 84,252,801)(84,214,162 - 84,214,516)
sequence
NNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAAGCTCAGGGTTGGCTCAAGGACTTCCTAGGACATTGGAAC
ACTGGTGGAGGCTAATCCAATTTAGCTATATGTCAAAATCAATCCTTAAA
GGCACTTAAAACAATATTGAGGGAGAGCACACAGATCTATACACCAGACT
AACACGGGAACAGGTTTGGAGCATACGTGCTATGGGAATGCCAATGTTCC
AGGAGGCTAAGTTTCTCTGAAACTCTTTGCCTCGGGACTGCTTCCAGGCT
TCTAGGCCTATCACGTGAGTGACTACTGGAGTGGATGTAGCACTTGTCCA
ATATATTTTCTCTCCCTATGCCTATCATGTTGTCTGACCTGGGCACAGAT
CCTAACCTTGAAATGAACCCATGTTCCCAGCCACCCCCAAAAGTTCCATC
TCTATCTAGGCATCTGTGCTAGAAAATGCTTAATTACTAAATGCTACCTA
CTATGTGCCAGGAGCCATCCGAGTTACAGGCAAGATGGATTTATTTTGGG
GGTAGGTGTATAAACTCAATCATGCAAGCTGAGTGTGGAAGCACAGGTCC
AGCCTTCTAGTACTCGGAGGCTGAGACGGGGGGATCTCGAAATCTAGAAC
AGCCTGGGCTAATAATAAAAACTGGTGGAAAAGGGGGGGTGGGAAAAATT
GCCCCCAAATAAGAAAAACAAATGGCAGGGCCTTCCCAAGCCATAACTTT
ATTTTTTGGCCGGAACTTGGGGAAAAA

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTCCCCAGAGCTCAAGTTAGCAG
TGGGAAAGGGTGATGCACACTTGTAACCCTAGTGCTGGGGAAGCAGAGAC
AGGAGGATTCCAGGACTTTACTGATCAGCCAGCTTAGCTGGATCTAGGAA
GCCCTGGCTAGCAAGAACCCCAGTCTCGAAAATCAAGGAGAATGGCTGCT
GAGGAATGACACTCAAGGTGGACCTCTGGTGTTCACATGCGCATGCACAC
ACACTCACCCCATTCCCTCAATAAAGACCATGTGCTGGGTGCTGAAGGTA
CCTCAAGGCAGGACCTGACACTCTAAGGACACATGACTGAGGGCAGCTTC
TGCTAGAGTAGGTAGCAGATATGGGGGGGGGNNNNNNNNNNTGNNGNGGN
GNNNNNGNNNNGNNNGNNNNNNNNNNNNNNNGNNGGNNNNNNGNNGGNNN
GNGGNGNNNNNNNGNNNGGGGGNNNNNNNGGNNNGNNNGGNNNNNGGNNN
NNNGGNNNNNGNNNGNNNNNNNNNNGGGGGGNGGNNNNNNNNGNNNGNGN
NNNNNNNGGGNGGGGNGGGGGNGGNNNNNNGGGGNNNNNNGGNNNNNGNN
NNNNNGGNNNGGNNNNGNNNGNNNNNNNGGGNGGGGNNGGGGGGGGNNNN
NGGGNGNNNGNNNNNGGNNNNNNNGNNNNNNNNGNNNGNNGGNNNNNGNN
NNNNGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_b21.b1 MSMg01no409_b21.b1 CHROMAT_FILE:
MSMg01no409_b21.b1 PHD_FILE: MSMg01no409_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:21 2005
         (486 letters)



>mm_chr6_84251916_84252801
          Length = 886

 Score =  712 bits (368), Expect = 0.0
 Identities = 386/392 (98%)
 Strand = Plus / Minus

                                                                       
Query: 95  tccttaaaggcacttaaaacaatattgagggagagcacacagatctatacaccagactaa 154
           ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 886 tccttaaaggcacttaaaacaatattgagggagagcacacagacccatacaccagactaa 827

                                                                       
Query: 155 cacgggaacaggtttggagcatacgtgctatgggaatgccaatgttccaggaggctaagt 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 cacgggaacaggtttggagcatacgtgctatgggaatgccaatgttccaggaggctaagt 767

                                                                       
Query: 215 ttctctgaaactctttgcctcgggactgcttccaggcttctaggcctatcacgtgagtga 274
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||
Sbjct: 766 ttctctgaaactctttgcctcgggactgcttccaggcttctaggcctgtcacacgagtga 707

                                                                       
Query: 275 ctactggagtggatgtagcacttgtccaatatattttctctccctatgcctatcatgttg 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ctactggagtggatgtagcacttgtccaatatattttctctccctatgcctatcatgttg 647

                                                                       
Query: 335 tctgacctgggcacagatcctaaccttgaaatgaacccatgttcccagccacccccaaaa 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tctgacctgggcacagatcctaaccttgaaatgaacccatgttcccagccacccccaaaa 587

                                                                       
Query: 395 gttccatctctatctaggcatctgtgctagaaaatgcttaattactaaatgctacctact 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gttccatctctatctaggcatctgtgctagaaaatgcttaattactaaatgctacctact 527

                                           
Query: 455 atgtgccaggagccatccgagttacaggcaag 486
           ||||||||||||||||| ||||||||||||||
Sbjct: 526 atgtgccaggagccatctgagttacaggcaag 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no409_b21.g1 MSMg01no409_b21.g1 CHROMAT_FILE:
MSMg01no409_b21.g1 PHD_FILE: MSMg01no409_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:21 2005
         (356 letters)



>mm_chr6_84213962_84214717
          Length = 756

 Score =  663 bits (343), Expect = 0.0
 Identities = 352/355 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtccccagagctcaagttagcagtgggaaagggtgatgcacacttgtaaccctagtgct 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtccccagagctcaggttagcagtgggaaagggtgatgcacacttgtaaccctagtgct 260

                                                                       
Query: 61  ggggaagcagagacaggaggattccaggactttactgatcagccagcttagctggatcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 ggggaagcagagacaggaggattccaggactttactgatcagccagcttagctggatctg 320

                                                                       
Query: 121 ggaagccctggctagcaagaaccccagtctcgaaaatcaaggagaatggctgctgaggaa 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 ggaagccctggctagcaagaaccccagtcttgaaaatcaaggagaatggctgctgaggaa 380

                                                                       
Query: 181 tgacactcaaggtggacctctggtgttcacatgcgcatgcacacacactcaccccattcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgacactcaaggtggacctctggtgttcacatgcgcatgcacacacactcaccccattcc 440

                                                                       
Query: 241 ctcaataaagaccatgtgctgggtgctgaaggtacctcaaggcaggacctgacactctaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcaataaagaccatgtgctgggtgctgaaggtacctcaaggcaggacctgacactctaa 500

                                                                  
Query: 301 ggacacatgactgagggcagcttctgctagagtaggtagcagatatggggggggg 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggacacatgactgagggcagcttctgctagagtaggtagcagatatggggggggg 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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