Query= MSMg01no409_c01.b1 MSMg01no409_c01.b1 CHROMAT_FILE:
MSMg01no409_c01.b1 PHD_FILE: MSMg01no409_c01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:22 2005
(515 letters)
>mm_chr6_19220128_19221045
Length = 918
Score = 909 bits (470), Expect = 0.0
Identities = 503/518 (97%), Gaps = 9/518 (1%)
Strand = Plus / Minus
Query: 4 ggaattcagtctg---gtttccgctcagaaaattgaacatagtactacctgaggacccag 60
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ggaattcagtctggcagtt---gctcagaaaattgaacatagtactacctgaggacccag 683
Query: 61 ctataccactcctgggaatacagccaaaagacgctccaacatataacaaggacacatgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ctataccactcctgggaatacagccaaaagacgctccaacatataacaaggacacatgct 623
Query: 121 ccacaatattcatagaagccttatttataatagccagaacctggaaataatccttgctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ccacaatattcatagaagccttatttataatagccagaacctggaaataatccttgctgc 563
Query: 181 ttttcaagagagactttagagagttgttaaaatgcaactctggtggcctactggttaggg 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttttcaagagagacttcagagagttgttaaaatgcaactctggtggcctactggttaggg 503
Query: 241 ttggtggattagaaaattacaaaaaaa---tttttgttaaactgtctttattaaaggttt 297
||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||
Sbjct: 502 ttggtggattagaaaattacaaaaaaaatttttttggtaaactgcctttattaaaggttt 443
Query: 298 tcttttgggggggtcatattggggtctttggtttgtttgattttactttctttttattgg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tcttttgggggggtcatattggggtctttggtttgtttgattttactttctttttattgg 383
Query: 358 ttattttatttatttacatttcaaatattaccccccattcccagtttcctctcttcaaac 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttattttatttatttacatttcaaatattaccccccattcccagtttcctctcttcaaac 323
Query: 418 tccctttctaacccccatccccccctgcttctatatcagtgctccccccacactcaccaa 477
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tccctttatatcccccatccccccctgcttctatatcagtgctccccccacactcaccaa 263
Query: 478 ctctcacctcaccaccctatcattcccttatgctgggg 515
||| ||||||||||||||||||||||||||||||||||
Sbjct: 262 ctcccacctcaccaccctatcattcccttatgctgggg 225
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 918
Length adjustment: 10
Effective length of query: 505
Effective length of database: 908
Effective search space: 458540
Effective search space used: 458540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_c01.g1 MSMg01no409_c01.g1 CHROMAT_FILE:
MSMg01no409_c01.g1 PHD_FILE: MSMg01no409_c01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:22 2005
(491 letters)
>mm_chr6_19131487_19132378
Length = 892
Score = 598 bits (309), Expect = e-175
Identities = 447/513 (87%), Gaps = 40/513 (7%)
Strand = Plus / Plus
Query: 1 tttgtttagctctgagcctcactttttaatggggttatttgattttct--ggcatcctct 58
||||||||||||||||||||| ||||||||||||||||||| |||||| || ||||||
Sbjct: 172 tttgtttagctctgagcctca-tttttaatggggttatttgtttttctgagg--tcctct 228
Query: 59 tccccttcttaactaccaactttaagttctttctcaaacactagac-aaaatcccagtac 117
|| | ||| || |||||||||||||||||||| |||||||||| || ||||| |||||||
Sbjct: 229 tctctttcgtacctaccaactttaagttctttttcaaacactaaacaaaaat-ccagtac 287
Query: 118 aaggaaatctccccaagcctggaaaaactatataatttgacacccccaaagaaacaaaat 177
| ||||||||||||||||| |||||||| |||||| |||||| |||||||||||||||||
Sbjct: 288 agggaaatctccccaagccaggaaaaacgatataaattgacatccccaaagaaacaaaat 347
Query: 178 aaaacaaaacactccaaagtgtatccaaataaaagtaca-----tgaaaaat-------- 224
||||||||||||||||||||||| ||||||||||||| | | ||||||
Sbjct: 348 aaaacaaaacactccaaagtgtacccaaataaaagtataataaataaaaaataaaaataa 407
Query: 225 -----------------tgtggagtccatttttagtcaactactcctgagtatgagatgt 267
|||||| |||||| ||||||||||||||||||||||||| |||
Sbjct: 408 aataaaaataaaaaaattgtggaatccattcttagtcaactactcctgagtatgagttgt 467
Query: 268 gtcctggggtagttgatatatctaatgtcattctattgtaggactctacttttcttctct 327
||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 468 gtcatggggtagttgatatatctaatgtcactctattgtaggactctaattttcttctct 527
Query: 328 cagcagatctaagtaacagttcaattgtttacctttaccctagtag-ctaggctttcatt 386
|||||||| ||||||||||||||||| ||||||||| ||||||| | |||||||||||||
Sbjct: 528 cagcagatataagtaacagttcaattatttacctttcccctagt-gactaggctttcatt 586
Query: 387 cattagtttattgattgatcaactattt-aaaaatatagcaaaataaaatgcagtataat 445
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 587 cattaatttattgattgatcaactattttaaaaatatagcaaaataaaatgcagtataat 646
Query: 446 aaaacaaaactatcactttggagttattttatg 478
||||||||||||||||||||||||| |||||||
Sbjct: 647 aaaacaaaactatcactttggagttcttttatg 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 892
Length adjustment: 10
Effective length of query: 481
Effective length of database: 882
Effective search space: 424242
Effective search space used: 424242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
