BAC Information

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BAC

Clone NameMSMg01-409C08
Chromosome6 (Build37)
Map Location 129,305,895 - 129,306,142
singlet/doubletsinglet
Overlap geneClec12a
Upstream gene5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik
Downstream gene4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409C08.T7 (MSMg01no409_c08.b1)MSMg01-409C08.TJ (MSMg01no409_c08.g1)
ACCAG506700AG506701
length772795
length of high quality
(start - end)
248 (73 - 320)246 (75 - 320)
definitionCHROMAT_FILE: MSMg01no409_c08.b1 PHD_FILE: MSMg01no409_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:23 2005CHROMAT_FILE: MSMg01no409_c08.g1 PHD_FILE: MSMg01no409_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGCAATAACTTTGACAACAATGGGTTAAAGTCTCTGAGATCTCT
TCAGCCTTCACCGCTGATGACGAAGAGAATTTACTGATTCATTGAATAAC
ATTAGTATAGAGTCAGTGAAAACTTAATTTTCTGGTTTAAATATTTGGCA
ACTGAATATTCACTCTGGGGCAAAGGAAGTGGTTAGTGGTTGCAAACCAG
ACTTAACAGAAAAAGATGAACACAGTGCCATAGAGTCAGAGAAAAATAGT
GACTACAGAGCCCAGAGACCACTCTTTTTTTTTTGGCCAAAGTAACATAG
GGGAAGGGGAGGTTAAGTCAGTTATTTTTTTAAAGTAAATAATTATGAAT
AATCACTTGAGAAAAGTCAGTGAGACAGAATAATCTATTTTATAGGAGAA
TTCCTTTCTCCTATAAAAGATGACATGTTTCTTATGGTAGAGAAGACGAG
CCATTAAGGTGATATTTTTACTCCACAATAAATGGCTACAATCTAGGATC
AGCATATCACACTGATAATTCTAGCCCTTGGAAGGCTGAGGCACGAGGAT
TGCTGTGAATTGGAGCGTAGCTGGGGATACTGAGTGAGACGTATCTCTAA
AAATAATAATAAAGGATTATTACGTTGTTGAATCTAACCACTTGACTATA
CGCGAATATATATATACTTTATTTAAACCAGTGACTCTCCATCTGTGGCT
CCCTAACCCCACTGTCCGTTTN
CCATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTAACATG
AAGGGATGCTGATTTTTGTCAAATGCTTTATCAACATCTAATGAAATGAT
TATGGTTTTTTTCTTTGAGTTTGTTTGTGTAGCAGATTACATTGATGGAT
TTCTGTATATTGAATCATCCCTGCATCCCCGGGATGAAGGCTACTTGATT
ATAGTGAATGATTGTTTTGATGTGTTCTTGGATTCAGGTGGCAAGAATTT
CATTGAGTAGTTTTGCATCATTGTTCTTTTGGGAAATTGGCCTGAAGCTC
TTTTCCTTTGTTTGGTCTTTGTGTGGTTTAGGTATAAGCATATTCATGGC
TTCTCAGATCAAATTGCTTAGTGTTCCTTCTGTTTCTACTTCGTGGAATA
TTTTGAATACTATTGGTATTATGTCTTCTCTTAAGTATTGTAACAACTCT
CTTCTTTCTCCTTCTGGTCTTGGGAATTTTCTCTTATTTTCATCTCGGTT
TTTTACATTACCTTTCGTTTGTCTTCTATTCCTCCTCGTCTTTTCTCTTA
TTTGTTCCACAATGTTTTACCGTCACCTTGCTTTCACTACATTATCTTTT
CATTCCTTCCTTTCTTTATTTTTCTCTTCCCTCTTTTTTTTTTACTCTAT
TCTTTTGTTCTATTTATATTACTTCCATTTTCCATTCTACCATCTTTTTA
CTATCTTCTTTTACTATATTCTTTCTATTTCTCTATTTTCCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_c08.b1 MSMg01no409_c08.b1 CHROMAT_FILE:
MSMg01no409_c08.b1 PHD_FILE: MSMg01no409_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:23 2005
         (248 letters)



>mm_chr6_129305695_129306342
          Length = 648

 Score =  464 bits (240), Expect = e-135
 Identities = 246/248 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaatgggttaaagtctctgagatctcttcagccttcaccgctgatgacgaagagaattt 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 acaatgggttgaagtctctgagatctcttcagccttcaccgctgatgacgaagagaattt 389

                                                                       
Query: 61  actgattcattgaataacattagtatagagtcagtgaaaacttaattttctggtttaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 actgattcattgaataacattagtatagagtcagtgaaaacttaattttctggtttaaat 329

                                                                       
Query: 121 atttggcaactgaatattcactctggggcaaaggaagtggttagtggttgcaaaccagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 atttggcaactgaatattcactctggggcaaaggaagtggttagtggttgcaaaccagac 269

                                                                       
Query: 181 ttaacagaaaaagatgaacacagtgccatagagtcagagaaaaatagtgactacagagcc 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 268 ttaacagaaaaagatgaacacagtgccatagtgtcagagaaaaatagtgactacagagcc 209

                   
Query: 241 cagagacc 248
           ||||||||
Sbjct: 208 cagagacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)