NGGGGTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTGCATATGCATTTTAATAAAAGTTTAACAAAAAGAT
ACATGGAAATGATATTAAGTTTACAACATTGTTCTTCAAGATAGCAGACC
TAGTGGTAAGAAAGCAAGCCATAATTAGCAAACCATTAAAACAGTCCTGA
AATGGCAAACGCAAAAACTGTTCACACTGATAATGAAATAAAGCAGAAAA
GAATAATCCAGTAGTCCCAGCACAGAACTAATCCATCACCCATTTTAGAG
TTTGTCTTCAAGATAAAGTGTCACTCTGTCCCCGTGACCTTCCTTATATA
AGATCCTGTCATCACTCACATGAGCTATGGAAAGAAACCTTCGAAGTGCT
GTGCTTGTTTTTCAAGTCTACCCTTCACTACACAGTGCTGTTATATTTTG
CAAACATAAATAAAACAGCTGTGCTTGTGTATATGCTTTTTTTCAGGCAA
GGGGCTTCTCAGGGGAAGGACATCACATGTATATCCTTACTGATGCTCAT
TGTATCTAAGCTTAGCAGTCTGCTCATATAGTTCTACTCCTTCAGGATAC
TGACTTGTGAGTGCGTTGTTTCCATTGCTTGCCCCTCTGATAGACATATC
TTCAGTTTAGCAAAGGCTTGCATGAAGNTATATTATGACCCAGAGTGAGG
ATCTACCCAAAATAGAGTGCAGAATTTTTCTTGGTGCCCACC

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAAGAACAGACTTGGAGG
AGGAAGCAGCTCGTTATGAGAGAAAAAAGTACCAGCCAGATAAAATGCTA
GCTAATCAGTTAAGGAAAAAGCCAAAAGCGGCTGGCGAAGGCCAGCATGC
TGTTCAGCCTCCAGGCAGTCGGCTTCAAGGTCATAGTGCACTTCCGCCCT
ATGCGGAGCCCCCACCCTGCATAAGGCGTCAGCCCTGCGCAGAGAGGCAA
TGGACAGAGAGGCAATGCGCAGACTCGTTCATTCCTAGAGAGGAACAAAG
GAAAATGCAACAGGCATTTCCGGTCTTTGAAGGAGCCGAGGGTGGGCGTG
TCCACGCTCCGGTAGAATATGTGCAGATTAAAGAGCTTGCCGAGTCGGTC
TGTAAATATGGAACCAATGCTAATTTTACCTTGGTGCAGTTAGACAGGCT
TGCCGGCATGGCACTAACTCCTGCCGACTGGCAAATGATTGCAAAAGCCA
CTCTCCCTAGTATGGGCAAATATATGGAATGGAGAGCTCTATGGCAAGAG
GCTGCACAAGCGCAGGCCCGAGCAAACGCTGCTGCTTTGACTCCCGAGCA
GAGAGATTGGACTTTTGACTTGTTAACCGGTCAGGGAGTTTATATTGGTG
ATTAATAAACTAACCCTGGGGGAGTTTATGCCCA

Query= MSMg01no409_c20.b1 MSMg01no409_c20.b1 CHROMAT_FILE:
MSMg01no409_c20.b1 PHD_FILE: MSMg01no409_c20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:26 2005
         (554 letters)



>mm_chr6_79923139_79924094
          Length = 956

 Score = 1021 bits (528), Expect = 0.0
 Identities = 546/552 (98%), Gaps = 2/552 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgc-atatgcattttaataaaagtttaacaaaaagatacatggaaatgatat 63
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gaattctttgcaaaatgcattttaataaaagtttaacaaaaagatacatggaaatgatat 697

                                                                       
Query: 64  taagtttacaacattgttcttcaagatagcagacctagtggtaagaaagcaagccataat 123
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 696 taagtttacaacattgttcttcgagatagcagacctagtggtaagaaagcaagccataat 637

                                                                       
Query: 124 tagcaaaccattaaaacagtcctgaaatggcaaacgcaaaaactgttcacactgataatg 183
           ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 636 tagcaaaccattaaaacagtcctgaaagggcaaccgcaaaaactgttcacactgataatg 577

                                                                       
Query: 184 aaataaagcagaaaagaataatccagtagtcccagcacagaactaatccatcacccattt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 aaataaagcagaaaagaataatccagtagtcccagcacagaactaatccatcacccattt 517

                                                                       
Query: 244 tagagtttgtcttcaagataaagtgtcactctgtccccgtgaccttccttatataagatc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tagagtttgtcttcaagataaagtgtcactctgtccccgtgaccttccttatataagatc 457

                                                                       
Query: 304 ctgtcatcactcacatgagctatggaaagaaaccttcgaagtgctgtgcttgtttttcaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ctgtcatcactcacatgagctatggaaagaaaccttcgaagtgctgtgcttgtttttcaa 397

                                                                       
Query: 364 gtctacccttcactacacagtgctgttatattttgcaaacataaataaaacagctgtgct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gtctacccttcactacacagtgctgttatattttgcaaacataaataaaacagctgtgct 337

                                                                       
Query: 424 tgtgtatatgc-tttttttcaggcaaggggcttctcaggggaaggacatcacatgtatat 482
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtgtatatgcttttttttcaggcaaggggcttctcaggggaaggacatcacatgtatat 277

                                                                       
Query: 483 ccttactgatgctcattgtatctaagcttagcagtctgctcatatagttctactccttca 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ccttactgatgctcattgtatctaagcttagcagtctgctcatatagttctactccttca 217

                       
Query: 543 ggatactgactt 554
           ||||||||||||
Sbjct: 216 ggatactgactt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 956
Length adjustment: 10
Effective length of query: 544
Effective length of database: 946
Effective search space:   514624
Effective search space used:   514624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)