BAC Information

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BAC

Clone NameMSMg01-409K01
Chromosome6 (Build37)
Map Location 113,062,301 - 113,062,549
singlet/doubletsinglet
Overlap geneSetd5
Upstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076, EG434077, Rad18, Srgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078
Downstream geneLhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13, Atp2b2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409K01.T7 (MSMg01no409_k01.b1)MSMg01-409K01.TJ (MSMg01no409_k01.g1)
ACCAG507067AG507068
length868840
length of high quality
(start - end)
249 (70 - 318)245 (77 - 321)
definitionCHROMAT_FILE: MSMg01no409_k01.b1 PHD_FILE: MSMg01no409_k01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:03 2005CHROMAT_FILE: MSMg01no409_k01.g1 PHD_FILE: MSMg01no409_k01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGGAAT
TCATGTCCGTTTTCATGAACCTTTGAACTGTCCTTTTTCTTGATCATGGT
TTGATGTACCGTTGTATTTGTTACACTGAAAATGAGACAGCATAGGATAC
TGGTTAGTACCTTACTTAGTTTTAGTCACATGGATATAACTGTCATTCTT
GGTACCAAGTTTTGTTTTGTTCTACTTGTTTTCCTCTTTGGGATAGGCAT
TTCTAGAGGGATCCCGGAAGTCCTTGCGGATGAAGGGAAGGTGTAAACCT
TTCCTGATGCTGCATTTTATATTTTTTCTTGCCTTTTGATGGATTCTTTC
CTAACGTTGATGGTCTGAGACTCTTGCAGCCTGCTTTTCTCAAGGTTGTA
ATGTTGTTATTCAGTTTCCATAAATATTTTCTCCATAGCGAACTTTCACT
GTCTACTTTATTGAACACTTTCATGTTTTCTGTTTCTTTGTGGATATTGT
TGCGTAATTAACTCCTAGCCTCTTTATTCTCTCTATCTACCATTCTTCCT
GTTTATTTTTTCCCCTGATTAGTTACCTCTCCCTATCTCTACCTCGCCCT
CTTCTCCTCTTCAATCTTTATTACGATCCCTTATTTCATCACTTTTCCAT
TTCTTTTTCTTTTCCCTTTTTATAATTTCCTTTTTCCCCATTGTACTTCA
TTTCTCTTCTTTTTTCTTCACCTTTTTTCTATTTCCTCCCCTTTTATTAT
TTCTTTTTATCCCATTCCCCACCTATCTTATTTTACATCACTTTCCTTTG
CCCCTACCCTTTATTTATTAATCCTTTTCCCACCCTTTCTTCCCCCTCCC
CCCACTTTCTCTACCTAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGTGTGGATCAGGCTGACTTCA
AACTCAGAGATCTTTCTGCCTCTGCATCCCGATTGCTGGAATTAAAGATG
TGGACCACTATGCCCTGCTTTTATTTAAAACTTTCATTTTTCTGTCTTTA
ACATTTTCTAAGCCAGGTAGTGGTGGCGCACACCTTTAATCCTAGCACTT
GGGAGGCAGATGCAGGCGGATTTCTGAGTTCTAGGCCAGCCTGATTTACA
GAGTGAGTTTCAGGACAGCCATTATTATTTTTAGAAACCCTGTCTTGATA
AATACAAATACTATTTTATATCCCGGCTACGTTAGCTTTTATGATTACAG
TACCTGTTATCCTCATTATGCATCTGAGAGTATATCCCTCTTGTTCGAGG
GAATATTATGTCTATGCAGCCTACGTCTCTCTAGAATCCTTTAACCTCGG
TTCCAAATTAGAACCTTTCTCATCTCTTGTCCCACCTCATTTTATGTTTT
TTTTCTCTCTATTTTTCACTTTGTTTCCGGTCTCTTTTTTTTCTTCTTTC
TCTCCTTCTTTTTTCTCTCCCCACTTCTATCCTTTTTATCTATTTTTTTC
GTATTATTTTCTTATTCTCTCTTTTCTTTACTTATCTGCCTTTTTCCCCC
TTCCTGCCGATCGACTATTTCTTATCTTCCCTCCTCACCAACATACTCAC
AAATTTTCTCTCTCATTCTATATTTATGTTATCCCCCCATTCATATTCCC
CTTCTAATAACCACTTTTCCCTCCTTATATTTCCTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_k01.b1 MSMg01no409_k01.b1 CHROMAT_FILE:
MSMg01no409_k01.b1 PHD_FILE: MSMg01no409_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:03 2005
         (249 letters)



>mm_chr6_113062101_113062749
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctttgaactgtcctttttcttgatcatggtttgatgtaccgttgtatttgttacactga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctttgaactgtcctttttcttgatcatggtttgatgtaccgttgtatttgttacactga 260

                                                                       
Query: 61  aaatgagacagcataggatactggttagtaccttacttagttttagtcacatggatataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgagacagcataggatactggttagtaccttacttagttttagtcacatggatataa 320

                                                                       
Query: 121 ctgtcattcttggtaccaagttttgttttgttctacttgttttcctctttgggataggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtcattcttggtaccaagttttgttttgttctacttgttttcctctttgggataggca 380

                                                                       
Query: 181 tttctagagggatcccggaagtccttgcggatgaagggaaggtgtaaacctttcctgatg 240
           |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 tttcgagagggatcccggaagtccttgcggatgaagggaaggggtaaacctttcctgatg 440

                    
Query: 241 ctgcatttt 249
           |||||||||
Sbjct: 441 ctgcatttt 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)