Query= MSMg01no409_m13.b1 MSMg01no409_m13.b1 CHROMAT_FILE:
MSMg01no409_m13.b1 PHD_FILE: MSMg01no409_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:16 2005
(614 letters)
>mm_chr6_137116145_137117158
Length = 1014
Score = 1156 bits (598), Expect = 0.0
Identities = 606/609 (99%)
Strand = Plus / Plus
Query: 6 gaattcaagaccagtttacactacatcatgagttccaggctggtccacctataagcagac 65
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcaagaccagcttagactacatcatgagttccaggctggtccacctataagcagac 265
Query: 66 agtgggtcaaaacaaaattcctcatttgtcattttatatatctcccttctatttaaggtt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agtgggtcaaaacaaaattcctcatttgtcattttatatatctcccttctatttaaggtt 325
Query: 126 tgcatgttgaatttgtttactagatttttttttaacttacaaacagctgctggctctttg 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgcatgttgaatttgtttactagatttttttttaacttacaaacagctgctggctctttg 385
Query: 186 aaacacagagcgtgcttgtgtacggagcatctgtagacaataacttgccatttcatgcaa 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaacacagagcgtgcttgtgtacggagcatctgtagacaataacttgccatttcatgcaa 445
Query: 246 aagtatcatccccatgcatctagaatctggctatagtcttcatttaaagtaagcatcaaa 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aagtatcatccccatgcatctagaatctggctatagtcttcatttaaagtaagcatcaaa 505
Query: 306 gtatatgtttttaaagccaagtcaaatatttcagcaactccccttggcctccgaagctca 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gtatatgtttttaaagccaagtcaaatatttcagcaactccccttggcctccgaagctca 565
Query: 366 cgggtctcacataggagaaattaattatgttagttaaagtgtcccatttgtgatgtcata 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cgggtctcacataggagaaattaattatgttagttaaagtgtcccatttgtgatgtcata 625
Query: 426 aagtgtccccatttatgacgtcataaagatccagctgcttaatgtcagccgcctaatatg 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aagtgtccccatttatgacgtcataaagatccagctgcttaatgtcagccgcctaatatg 685
Query: 486 tttagggaaaaggggggggcgatgcaacgctgccctctaaagatgccttcacattttatt 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tttagggaaaaggggggggcgatgcaacgctgccctctaaagatgccttcacattttatt 745
Query: 546 tccccatgaaaatttgacgganaccatcaacgtgtcaattgttgtcatagtaacctacag 605
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tccccatgaaaatttgacggaaaccatcaacgtgtcaattgttgtcatagtaacctacag 805
Query: 606 gcaagtatc 614
|||||||||
Sbjct: 806 gcaagtatc 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_m13.g1 MSMg01no409_m13.g1 CHROMAT_FILE:
MSMg01no409_m13.g1 PHD_FILE: MSMg01no409_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:16 2005
(502 letters)
>mm_chr6_137288125_137289027
Length = 903
Score = 944 bits (488), Expect = 0.0
Identities = 499/506 (98%), Gaps = 7/506 (1%)
Strand = Plus / Minus
Query: 1 aaaagctgcagcgttacctcaaaaataaataagtatctattaacaagacaatatgttgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 aaaagctgcagcgttacctcaaaaataaataagtatctattaacaagacaatatgttgaa 644
Query: 61 agtcacctctggggaaatagacgtttaatatataagaatagtagacagctgttgacattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 agtcacctctggggaaatagacgtttaatatataagaatagtagacagctgttgacattg 584
Query: 121 atccataatttgggggttaaaattgcaaaaccttttatactgttttcatgcctgtgtgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 atccataatttgggggttaaaattgcaaaaccttttatactgttttcatgcctgtgtgtt 524
Query: 181 tccagctcatctatgtaaccaatatgttctgggactcgcccagtcccttccccatagtat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tccagctcatctatgtaaccaatatgttctgggactcgcccagtcccttccccatagtat 464
Query: 241 tgctattacag----attttactacctaccgccatgcctggcattgtctgtggattctgg 296
||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tgctattacagaaaca---tactacctaccgccatgcctggcattgtctgtggattctgg 407
Query: 297 tattcaagtcaggttcttacaaattacagtgtctagtgtactgcaacctgggatcaattt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tattcaagtcaggttcttacaaattacagtgtctagtgtactgcaacctgggatcaattt 347
Query: 357 ttaaaacttgcaaatggaaaccatgaaaactaaattttaaatttctttgtgaagattggt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ttaaaacttgcaaatggaaaccatgaaaactaaattttaaatttctttgtgaagattggt 287
Query: 417 aatgataaaaatatggcagagggtatctccaaaaacggaagtcccaaaagaaaaggacag 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aatgataaaaatatggcagagggtatctccaaaaacggaagtcccaaaagaaaaggacag 227
Query: 477 tacatgttgaatagaaagaaatatcg 502
||||||||||||||||||||||||||
Sbjct: 226 tacatgttgaatagaaagaaatatcg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 903
Length adjustment: 10
Effective length of query: 492
Effective length of database: 893
Effective search space: 439356
Effective search space used: 439356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
