BAC Information

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BAC

Clone NameMSMg01-410G10
Chromosome6 (Build37)
Map Location 117,605,404 - 117,605,571
singlet/doubletsinglet
Overlap genenone
Upstream geneRassf4, C230095G01Rik, LOC100043439, Cxcl12, LOC213422, EG640142, LOC100043777, LOC621462
Downstream geneEG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26, Cacna1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410G10.T7 (MSMg01no410_g10.b1)MSMg01-410G10.TJ (MSMg01no410_g10.g1)
ACCAG507658AG507659
length821777
length of high quality
(start - end)
174 (77 - 250)157 (81 - 237)
definitionCHROMAT_FILE: MSMg01no410_g10.b1 PHD_FILE: MSMg01no410_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:08 2005CHROMAT_FILE: MSMg01no410_g10.g1 PHD_FILE: MSMg01no410_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGTATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXNCTACGAAAAATCCGC
GGAATTCTCAGGTTCACACAAAAAATTGAGCCTGGTCTCTTTCTGTCTCT
CCATCTTTAATTATGAAGCCATGTGCATCCATTAAAGTTCAACTCTTCTA
CCATTTCCTTTACAAAACCTCTGCCAGCTCTGTTCCTCCAGTAAAGGATG
GCTATGACATCTTTCTGTGCTCCTGAGCCTTTGGAACCTGCCTCATGGAT
TATTTGCTATGATCCCTTTCAGTCACTGCAAATTGCAAACAACCTGGCTC
TATGCCTATGGCCATCTTTTCTGATTTTAACGCGAGGATTATTGTGTCTG
CTGAGTCCAAGTCTTCACCCTGGGTAAGGATGCCCTGAATACTGCTGTAC
TCTGATTCATGCCTTCGTTCCCATTTTCATCCATACCACCCTACCCTTCC
CCCTCCTGATTAATTTGTCCCATGTCCTCATCCTTAAACCTTCTCCTCTA
TATCTAATTCCCTTGCCACATTTCACCCGTTCTTCCTTTCCTCCTCCACC
CTCTCCTTTCCTTACCCTTCTGAATTCCTCCCCTGCCACTATCTTCTATT
TTCCCCCCCCTACCCCCTTATTCTCTTCCTTACTACTCCTTTTCTCACCT
TCCATTCCTTTTGCTTCTCATTTCAACCCCCTACATTCTTATTATCCCAT
CTTCTAATCATCTTCATCCTTCCATTCCACTTTTCTTCCTCTTTTTCACC
TATTTCCCCTTTTATTCACACACTTTTTTCCCCCACTTTTCCTCCCTTAT
TTTTCACTCCCCTCTCCTTTT
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCCTATTGAGTGGGTCTT
ATGTCCAATTAGGTGGTTGTTGGTTGTCCCCAGAATGTAAGTCCTACCTT
TGGGGACCTCTTTTTGTTGTTGTGGGTTTTTTTTTTTTCAAGACAGGTTT
TCTTGTTTAGCTCTGGCTGTCTGGAACTCACTCTGTAGACCAGGCTGGCC
TCTATCTCAGAGATCCATCTGCCTCTGCCTCCCGAGTGCTGGTATTAAAG
GCGCGCGCCACCACGCCTGTTTTTTTTGTTTACCACTTGCCCTGTTGGTC
TCTGCTGTAGCTTGTATATTTTGCCCTTGCTTAGTATCATTTTTTGTTTT
TCTCTTTTGGCTCTTTCTGCTTACTCCCCTTGTCCTATTCTACCTTTTCC
TCTTGCCCCTCCCCTTTCCCCCATTCTCCCCTTCTTCCCTCCCTTCTTTC
CTCTTCCTCTCCCCTTCCTCCCTCCTCCCTTTCTCCTTCGTTTTTCCCGT
TCCCCCTCCCTTCTCCTCCCCTCCTTACCCCTTTTTCCCTTTTTCCTCCC
GTTTCTCCCTTCCTTTCCTTTCCTCTTCCATTTCCTTTCCCTTCCCCTTT
CCCTTCCTTTCCGCTTTTTCCTCCTTTCCTCTTCCCCTTCTTTTCCCTTC
CTCCCTTTTCCCCCCCTTTCCTCCCTTTTTCCCCCACTTTCCCCCCTTTT
TCTCCTCCCTTCCTTTTTCCCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_g10.b1 MSMg01no410_g10.b1 CHROMAT_FILE:
MSMg01no410_g10.b1 PHD_FILE: MSMg01no410_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:08 2005
         (174 letters)



>mm_chr6_117605204_117605772
          Length = 569

 Score =  296 bits (153), Expect = 5e-85
 Identities = 166/173 (95%), Gaps = 5/173 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagcctggtctctttctgtctctccatctttaattatgaagccatgtgcatccattaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagcctggtctctttctgtctctccatctttaattatgaagccatgtgcatccattaaa 260

                                                                       
Query: 61  gttcaactcttctaccatttcctttacaaaacctctgccagctctgttcctccagtaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcaactcttctaccatttcctttacaaaacctctgccagctctgttcctccagtaaag 320

                                                                
Query: 121 gatggctatgacatctttctgtgctcctgagcctttggaacctgcctcatgga 173
           |||||||||||||||||||| ||     || ||||||||||||||||||||||
Sbjct: 321 gatggctatgacatctttctttg-----gaacctttggaacctgcctcatgga 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 569
Length adjustment: 8
Effective length of query: 166
Effective length of database: 561
Effective search space:    93126
Effective search space used:    93126
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)