BAC Information

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BAC

Clone NameMSMg01-412A24
Chromosome6 (Build37)
Map Location 63,146,764 - 63,147,280
singlet/doubletsinglet
Overlap genenone
Upstream geneC130092O11Rik, GA_x5J8B7W6GG0-4757855-4757501, LOC667099
Downstream geneGrid2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412A24.T7 (MSMg01no412_a24.b1)MSMg01-412A24.TJ (MSMg01no412_a24.g1)
ACCAG508925AG508926
length783780
length of high quality
(start - end)		523 (47 - 569)368 (79 - 446)
definitionCHROMAT_FILE: MSMg01no412_a24.b1 PHD_FILE: MSMg01no412_a24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:18 2005CHROMAT_FILE: MSMg01no412_a24.g1 PHD_FILE: MSMg01no412_a24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTAGACTTGTACACTGGTTTATGCCAGGGAAGAAGAGCAGACT
AAACTCAACAAGGGGGAATAAATATGATTAAGTCCTGATGGATCATTACA
AGTGTAATGGTATCTACCATAGAGTCACACATTTCTCTATGATTTTACCC
AGAACACTGTGTATAACACATTTTAGCATTTTGCCCAACATGATCCACCT
GGTCCTTTGTGTCGATATTTTCATGTGGTCTTAATCACATAGATATAGAG
TACTCACAGGACTAATTTTAACTATTCAAACCCACTTTTCCAAAAGACCA
ATACCAGACTTAGAACATGGTCCAATTTCTGGTTCGTCAGATATTATAAT
CAGGCAGAATACCCAAGGGCTCAGAGCAACTACCAAGATCCAGGCAGTGA
GCATTACTAAGGTTGTGCCTTCCTCTGGATACAGGGTGAGGCACCAAGAT
TGTCCCCTTTCCTTCATGATCAAGCATCCAGAATATATTTAGTAAAGATT
AATATTTTATTTTATTTNAAAAGATTTTGATTTCACTTGAGTATTTCCGA
AAGCATAATAGAAAATACCTGGACCATTGTTATTTTAGGAAAACCAAAAT
CTCCACCATTTCTATTTTTCCCACTAAAAACTCCCGAACCAGAAATGGTG
GAGGGGAAAATCTTTACCCCCACCCGCCAAAAAAAAACCCTGGGGAATTT
TCTTCCCCCCAAAATCCCCCAAAAAAAGATTCC

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCATT
CTTTTTAATAAGGGTTATTTGGTTTTTTGGAGTCTAACTTCTGGAGTTCT
TTGTATATATTGGATATTAACCCCCATCAGACTTAGGATTAGTAAAAATC
TTTTCCAAATCTGTTGGTTGCCTTTTTGTCGTATTGACAGTGTCCTTTGC
CTTACAGAAGCTTTGCAATTTTTGTGAGGTTCCATTTGTTGATTCTTGAT
CTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCT
CATAACCTTCTAGGCTCTTCCCCACTTTCTCTATAAATTTCAGTGTCTCT
GGTTTTAGGTGGAGTTCCTTGATCCACTTAGACTTGAGCTTTGTACTAGG
AGATAAAAATGGATCAATTTGCATTCTTCTACTTGCTAATTGCCAGCAGA
ACCAGCACCACTTGGTGAAAATGCTCCCCTTTCCCCTGGATGGGTTAAGC
CTTTTTCGTCAAGATCAAGTGGTCATACACGGTGGGGGTCTCTCTCGGGG
CCTCCATATTTTTTTTTTGATATCCCCGCCCGCGCCGGTCTATATCCCCG
GGATTTTTTTTCTTTTGCCCTGTATTTTTTTCCCCGTCCTTCCTCGCTCC
CCCCATTTTTTTTATTTTATGCCACCACCCTCTATCATATCCTATTTCTT
CCAACTAATTTATTTTTTTTCCCCTTTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_a24.b1 MSMg01no412_a24.b1 CHROMAT_FILE:
MSMg01no412_a24.b1 PHD_FILE: MSMg01no412_a24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:18 2005
         (523 letters)



>mm_chr6_63146560_63147482
          Length = 923

 Score =  969 bits (501), Expect = 0.0
 Identities = 513/517 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactagacttgtacactggtttatgccagggaagaagagcagactaaactcaaca 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactagacttgtaaactggtttatgccagggaagaagagcagactaaactcaaca 264

                                                                       
Query: 65  agggggaataaatatgattaagtcctgatggatcattacaagtgtaatggtatctaccat 124
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agggggaataaatatggttcagtcctgatggatcattacaagtgtaatggtatctaccat 324

                                                                       
Query: 125 agagtcacacatttctctatgattttacccagaacactgtgtataacacattttagcatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agagtcacacatttctctatgattttacccagaacactgtgtataacacattttagcatt 384

                                                                       
Query: 185 ttgcccaacatgatccacctggtcctttgtgtcgatattttcatgtggtcttaatcacat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgcccaacatgatccacctggtcctttgtgtcgatattttcatgtggtcttaatcacat 444

                                                                       
Query: 245 agatatagagtactcacaggactaattttaactattcaaacccacttttccaaaagacca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agatatagagtactcacaggactaattttaactattcaaacccacttttccaaaagacca 504

                                                                       
Query: 305 ataccagacttagaacatggtccaatttctggttcgtcagatattataatcaggcagaat 364
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 505 ataccagacttagaacatggtctaatttctggttcgtcagatattataatcaggcagaat 564

                                                                       
Query: 365 acccaagggctcagagcaactaccaagatccaggcagtgagcattactaaggttgtgcct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acccaagggctcagagcaactaccaagatccaggcagtgagcattactaaggttgtgcct 624

                                                                       
Query: 425 tcctctggatacagggtgaggcaccaagattgtcccctttccttcatgatcaagcatcca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcctctggatacagggtgaggcaccaagattgtcccctttccttcatgatcaagcatcca 684

                                                
Query: 485 gaatatatttagtaaagattaatattttattttattt 521
           |||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaatatatttagtaaagattaatattttattttattt 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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