Query= MSMg01no412_b20.b1 MSMg01no412_b20.b1 CHROMAT_FILE:
MSMg01no412_b20.b1 PHD_FILE: MSMg01no412_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:23 2005
(598 letters)
>mm_chr6_52646570_52647567
Length = 998
Score = 1100 bits (569), Expect = 0.0
Identities = 581/585 (99%)
Strand = Plus / Minus
Query: 14 cattgtacctgttttcttttagagcattaagaccttctacatgctggataaatgctctgc 73
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998 cattgtaattgttttcttttagagcattaagaccttctacatgctggataaatgctctgc 939
Query: 74 cactaagctatgtccccagccctctttctcactattttgagacagggtcacactaacttg 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 cactaagctatgtccccagccctctttctcactattttgagacagggtcacactaacttg 879
Query: 134 cccaagcaggccttgaacttgctgtcctcttgccttagcctacaaagtagctggaatttc 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 cccaagcaggccttgaacttgctgtcctcttgccttagcctacaaagtagctggaatttc 819
Query: 194 aggccttcaccaccaaaccccatcccctattacactcttttgacactatacacctactgt 253
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 aggccttcaccatcaaaccccatcccctattacactcttttgacactatacacctactgt 759
Query: 254 ttattcatactttatagtttcattagttttcatgattattttctaatatcctttgctatc 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 ttattcatactttatagtttcattagttttcatgattattttctaatatcctttgctatc 699
Query: 314 agtagttaatgttgctatgtgctaaaagatcacattttgtttcattcatcaccatggcct 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 agtagttaatgttgctatgtgctaaaagatcacattttgtttcattcatcaccatggcct 639
Query: 374 taccatgtaatataattaatgaataagtgactgactatagtgccatcgtggtgcctaaaa 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 taccatgtaatataattaatgaataagtgactgactatagtgccatcgtggtgcctaaaa 579
Query: 434 gtcaagagtttatgcagagagacactaataactatataagaaatcatcctataagagaga 493
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 578 gtcaagagtttatgcagagagacactaataactatataagaaatcatcctagaagagaga 519
Query: 494 ctagaaatttgggttataaaatgatgcatatgccacgctctgtgtgccattttaaataat 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ctagaaatttgggttataaaatgatgcatatgccacgctctgtgtgccattttaaataat 459
Query: 554 aatcaaaagactggaaaactacttgtgacttaatctaacaaaaaa 598
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aatcaaaagactggaaaactacttgtgacttaatctaacaaaaaa 414
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_b20.g1 MSMg01no412_b20.g1 CHROMAT_FILE:
MSMg01no412_b20.g1 PHD_FILE: MSMg01no412_b20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:23 2005
(503 letters)
>mm_chr6_52497749_52498651
Length = 903
Score = 861 bits (445), Expect = 0.0
Identities = 493/517 (95%), Gaps = 16/517 (3%)
Strand = Plus / Plus
Query: 1 agcatctgggcaactgtgttactacatttgttctggggcaaagggtggggagttctagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 agcatctgggcaactgtgttactacatttgttctggggcaaagggtggggagttctagaa 248
Query: 61 gacctaaagatctgttggcctaagtatgttctagaggagagatgacaaacgaaatgagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gacctaaagatctgttggcctaagtatgttctagaggagagatgacaaacgaaatgagat 308
Query: 121 gccatccagaaaaatcaacacaccaaaacaacaacaac--------c-accaccaccacc 171
|||||||||||||||||||||||||||||||||||||| | || || ||||||
Sbjct: 309 gccatccagaaaaatcaacacaccaaaacaacaacaacaacaacaacaacaacaaccacc 368
Query: 172 accaaatagctgggtgtggtgacgtacacctttaatcccagcacttgagaggcagaggca 231
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 369 accaaatagctgggtgtggtggcgtacacctttaatcccagcacttgagaggcagaggca 428
Query: 232 ggtggatttctgagttcgaggccaccctggtctacaaagtgagttccaggacagctaggg 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ggtggatttctgagttcgaggccaccctggtctacaaagtgagttccaggacagctaggg 488
Query: 292 ctatacagagaaaccctgtctcaaaaaaccaaaaaaacaaaaacaaaac-----caaaac 346
||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 489 ctatacagagaaaccctgtctcaaaaaaccaaaaaaa--aaaacaaaacaaaaacaaaac 546
Query: 347 aaacaaataaccaaaaccaaaacaaaacaaaacagaaacaaataaatgcctttaaacgac 406
||||||| |||||||| |||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 547 aaacaaaaaaccaaaatcaaaccaaaccaaaacagaaacaaataaatgcctttaaacgac 606
Query: 407 taatttacacatgaaatcccttcgcacacttaacacaagagcattaacaacttggaaatc 466
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 taatttatacatgaaatcccttcgcacacttaacacaagagcattaacaacttggaaatc 666
Query: 467 acactgctcccaatctaaggagtttttaagttaatgt 503
|||||||||||||||||||||||||||||||||||||
Sbjct: 667 acactgctcccaatctaaggagtttttaagttaatgt 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
