Query= MSMg01no412_d16.b1 MSMg01no412_d16.b1 CHROMAT_FILE:
MSMg01no412_d16.b1 PHD_FILE: MSMg01no412_d16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:31 2005
(617 letters)
>mm_chr6_52878664_52879679
Length = 1016
Score = 1162 bits (601), Expect = 0.0
Identities = 613/617 (99%), Gaps = 1/617 (0%)
Strand = Plus / Plus
Query: 1 tgcactatataaaatgaagatgttttaaatattttaggcaagtgaaatatggaaaaaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcactatataaaatgaagatgttttaaatattttaggcaagtgaaatatggaaaaaatt 260
Query: 61 tcaactcatgtttagatcttttttaaaaaaatactttgtaaggtattgtttttagtaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaactcatgtttagatcttttttaaaaaaatactttgtaaggtattgtttttagtaagc 320
Query: 121 tttatacaagaagtattgacactttggttattttattttagtttcagagacagggtttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttatacaagaagtattgacactttggttattttattttagtttcagagacagggtttct 380
Query: 181 ttgtatccgcctgcctctgcctcctgagtgctgggattaaaggtatgtgctgccgccacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtatccgcctgcctctgcctcctgagtgctgggattaaaggtatgtgctgccgccacc 440
Query: 241 tggctgctttggttaatttcatttaagcaagatctttacatttttacttatttatgtatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggctgctttggttaatttcatttaagcaagatctttacatttttacttatttatgtatt 500
Query: 301 tattcatttgagaaaggctttttttttaaaaccatgtatcccgtgttatattctaagaac 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 tattcatttgagaaaggctttttttt-aaaaccatgtatcccgtgttatattctaagaac 559
Query: 361 tggatacatgattacaagcatgtaccacttcttgcagcatgtcacattaatttgaaaata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tggatacatgattacaagcatgtaccacttcttgcagcatgtcacattaatttgaaaata 619
Query: 421 tcaggatcaaatttgctggaaagatgaagattagttccatcagtacccaggtaattacag 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcaggatcaaatttgttggaaagatgaagattagttccatcagtacccaggtaattacag 679
Query: 481 aaatttatttctaggaggaagcagatcagggataaagcagaagggccagaggacagtgtt 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 680 aaatttatttctaggaggaagcagatcagggataaagcagaagggccagacgacagtgtt 739
Query: 541 aagtccgtggtggtggtgaatggaacacttactccattggatcttaggagtattaattta 600
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aagtccatggtggtggtgaatggaacacttactccattggatcttaggagtattaattta 799
Query: 601 aaacatcgttattctta 617
|||||||||||||||||
Sbjct: 800 aaacatcgttattctta 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1016
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1006
Effective search space: 610642
Effective search space used: 610642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_d16.g1 MSMg01no412_d16.g1 CHROMAT_FILE:
MSMg01no412_d16.g1 PHD_FILE: MSMg01no412_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:31 2005
(493 letters)
>mm_chr6_53043963_53044854
Length = 892
Score = 915 bits (473), Expect = 0.0
Identities = 488/493 (98%), Gaps = 1/493 (0%)
Strand = Plus / Minus
Query: 1 agattcaagtctcatggaatttcaaagtaaacgactttaaaatggttttcttaatgccaa 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 692 agattcaagtctcatggaatttcaaagtaaatgactttaaaatggttttcttaatgccaa 633
Query: 61 tagtgtgttaccggacttaccttagatttcaaaagtatttattatgagaaataaatttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tagtgtgttaccggacttaccttagatttcaaaagtatttattatgagaaataaatttcc 573
Query: 121 catatcgccccccccaaaaaaaacccaccttagatgtttctgcgtagtctaactattgct 180
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 catatcg-ccccccaaaaaaaaacccaccttagatgtttctgcgtagtctaactattgct 514
Query: 181 agattttcctaataattgggagaaaaccatttctatggttctttctatcttctcatagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 agattttcctaataattgggagaaaaccatttctatggttctttctatcttctcatagac 454
Query: 241 agtcactcatactaggtgtagtcctgtgactcccactgaccaagaaatagtttcaagagt 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 agtcactcaaactaggtgtagtcctgtgactcccactgaccaagaaatagtttcaagagt 394
Query: 301 gatgacgtgagatatgtctgccccctgaggaagacttgatttcgtagcattctcaccctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gatgacgtgagatatgtctgccccctgaggaagacttgatttcgtagcattctcaccctg 334
Query: 361 acctgtgatccctgaaggcttgtgctgattggtgtccctaagagagaggggtaatgaggt 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 acttgtgatccctgaaggcttgtgctgattggtgtccctaagagagaggggtaatgaggt 274
Query: 421 caaagcagcaaagacaactaagcccaaacaaagggaatttaacctgcaaggccactcaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 caaagcagcaaagacaactaagcccaaacaaagggaatttaacctgcaaggccactcaca 214
Query: 481 acatttgttgttt 493
|||||||||||||
Sbjct: 213 acatttgttgttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 892
Length adjustment: 10
Effective length of query: 483
Effective length of database: 882
Effective search space: 426006
Effective search space used: 426006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
