BAC Information

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BAC

Clone NameMSMg01-412K09
Chromosome6 (Build37)
Map Location 45,711,486 - 45,711,860
singlet/doubletsinglet
Overlap geneCntnap2
Upstream geneLOC100040210
Downstream geneRbpsuh-rs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412K09.T7 (MSMg01no412_k09.b1)MSMg01-412K09.TJ (MSMg01no412_k09.g1)
ACCAG509371AG509372
length759750
length of high quality
(start - end)
368 (85 - 452)381 (82 - 462)
definitionCHROMAT_FILE: MSMg01no412_k09.b1 PHD_FILE: MSMg01no412_k09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:05 2005CHROMAT_FILE: MSMg01no412_k09.g1 PHD_FILE: MSMg01no412_k09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGTTCCTTTCCTCATGAGTATGTAGATATAAATGTGTCAAA
CAAAATTAAACAGGAGGAAAAAGGCTAATGTGAAAACATTAAATAGAGTG
AAGAATTAAGGCAAAAAACTAAAAATAATTGAATTCACAACAATATTTAA
GATTGGGTTAGTCTGTTGGGGATAGGTAATTAGGTGCTCTTTGTCTGCTA
ATTAGCTGTGTCCAAAAGGTGAAATTGTTTCTTACTGTCATGACTTGAGT
TAGAGCTACACCTTGGCATGGGGTGTAATTTAAGGCTTCTGTCCTCTATA
CATTAACCTGGGAGGGTATAGAGGTGTTCAATCTCCCTCTTATTTGCCGT
TTAGAGAGACAGTTCCTAAATCCTAAGGTAAATGCTGCCTGTGTTTGACA
ACTGCATGATGAGTTTAAGGATATGCATAGAAGGTCCCAGAAGGTGGCAG
TTTCTGAATTACATTCACCATGAAAAGGTCCGCCCTAGTTTATGGGGCTG
GCAATAGTTTTCTGCTTTTTTTACCCTATTTAACGCCTTCTTCCTTAAAC
ACGGTAACTTGATAGTAATCCTCCTTGCTCACACTCCCTTGCCTCTGAAT
CTCCCCCCTCAAATTTTGTTCTTCTCCCCCTTTTATTCTTTTTACACATC
TTGGTTCAAGCCATCTTACTAATCCTATTACCCCCTATATCTATCGCACC
CCCATCTTG
NNNNNCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTATGATAAAAGTTATAT
TAAGAATAAGCTGAGCTATCTCTTGTGAGGCTATGCCAGTGCCTGGCAAA
TACAGAAGTGAATGCTCACAGTCATCTATTGGATGGAACACAGGGCCCCT
AAAGAAGAAGCTAGAGAAAATACCCAAGGAGCTAAAGGGATTGGCAACCT
TATAGGAGGATCAACAATATGAACTAACCAGTACCCTCCAGAACTGTGTC
TCTAGTTGCATATGTAGCAGAGGATGGTCTAGTCAGTCATCAATGAGAGG
AGAGGCCCTCGGTCTTGCAAAGATCATATGCCCCAGTACAGGGGAATGCC
AGGGCCAGGAAGCAGGAGTGGGTGGGTAGGGGAGCAGGGCAGGGGGAGGG
TATAGGGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTTTNTTTTTTTTTTNNNNNNNNNNTNNTTNGNTTTTTTTTNTNTNNT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTNTTTTTTTTTTTTTTN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_k09.b1 MSMg01no412_k09.b1 CHROMAT_FILE:
MSMg01no412_k09.b1 PHD_FILE: MSMg01no412_k09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:05 2005
         (368 letters)



>mm_chr6_45711208_45711976
          Length = 769

 Score =  625 bits (323), Expect = 0.0
 Identities = 357/375 (95%), Gaps = 11/375 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atataaatgtgtcaaacaaaattaaacaggaggaaaaaggctaatgtgaaaacattaaat 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 653 atataaatgtgtcaaacaaaattaaacaggaggaaaaaggttaatgtgaaaacattaaat 594

                                                                       
Query: 61  agagtgaagaattaaggcaaaaaa-----------ctaaaaataattgaattcacaacaa 109
           ||||||||||||||||||||||||           |||||||||||||||||||||||||
Sbjct: 593 agagtgaagaattaaggcaaaaaacaaaaaaaaacctaaaaataattgaattcacaacaa 534

                                                                       
Query: 110 tatttaagattgggttagtctgttggggataggtaattaggtgctctttgtctgctaatt 169
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 533 tatttaagattgggttagtctgttggggataggaaattaggtgctctttgtctgctaatt 474

                                                                       
Query: 170 agctgtgtccaaaaggtgaaattgtttcttactgtcatgacttgagttagagctacacct 229
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 473 agctgtgtccaaaaggtgaaattgtctcttactgtcatgacttgagttagagctacacct 414

                                                                       
Query: 230 tggcatggggtgtaatttaaggcttctgtcctctatacattaacctgggagggtatagag 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tggcatggggtgtaatttaaggcttctgtcctctatacattaacctgggagggtatagag 354

                                                                       
Query: 290 gtgttcaatctccctcttatttgccgtttagagagacagttcctaaatcctaaggtaaat 349
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 353 gtgttcaatctccctcttatttaccgtttagagagacagttcctaaatcctaagggaaat 294

                          
Query: 350 gctgcctgtgtttga 364
           || | ||||||||||
Sbjct: 293 gccgtctgtgtttga 279


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 769
Length adjustment: 9
Effective length of query: 359
Effective length of database: 760
Effective search space:   272840
Effective search space used:   272840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)