MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-413H11
Chromosome	6 (Build37)
Map Location	115,019,727 - 115,020,357
singlet/doublet	singlet
Overlap gene	LOC100043420
Upstream gene	Slc6a11, LOC666491, Slc6a1, Hrh1, Atg7, Vgll4, 1500001M20Rik
Downstream gene	Syn2, Timp4, Pparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Slc6a11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:243616 MGI:95630
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666491 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666491
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 3 Proteins pseudo : _no_value

name	Slc6a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:232333 MGI:95627
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hrh1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15465 MGI:107619
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atg7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74244 MGI:1921494
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Vgll4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:232334 MGI:2652840
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1500001M20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68971 MGI:1916221
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043420 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043420
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Syn2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20965 MGI:103020
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Timp4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110595 MGI:109125
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pparg (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19016 MGI:97747
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tsen2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381802 MGI:2141599
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2510049J12Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70291 MGI:1917541
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 ESTs, 1 Protein

name	Mkrn2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67027 MGI:1914277
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Raf1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110157 MGI:97847
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043759 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043759
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 56 ESTs, 9 Proteins pseudo : _no_value

name	D830050J10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:352968 MGI:2444203
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 19 ESTs

name	Tmem40 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:94346 MGI:2137870
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG620848 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:620848 MGI:3645704
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 147 ESTs, 22 Proteins

name	Cand2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67088 MGI:1914338
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rpl32 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19951 MGI:98038
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC060267 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:212516 MGI:2681834
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mbd4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17193 MGI:1333850
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ift122 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:81896 MGI:1932386
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rho (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:212541 MGI:97914
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	H1foo (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:171506 MGI:2176207
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Plxnd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67784 MGI:2154244
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmcc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:330401 MGI:2442368
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 50 ESTs, 5 Proteins

name	Slc6a11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142367467 GeneID:243616 MGI:95630
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 6 (neurotransmitter transporter, GABA), member 11 transcript_id : NM_172890.2

name	Slc6a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142366248 GeneID:232333 MGI:95627
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 6 (neurotransmitter transporter, GABA), member 1 transcript_id : NM_178703.3

name	Hrh1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142345432 GeneID:15465 MGI:107619
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : histamine receptor H 1 transcript_id : NM_008285.3

name	Atg7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803043 GeneID:74244 MGI:1921494
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : autophagy-related 7 (yeast) transcript_id : NM_028835.2

name	Vgll4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31343305 GeneID:232334 MGI:2652840
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vestigial like 4 (Drosophila) transcript_id : NM_177683.2

name	1500001M20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76559943 GeneID:68971 MGI:1916221
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1500001M20 gene transcript_id : NM_026894.1

name	Syn2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:8567409 GeneID:20965 MGI:103020
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : synapsin II transcript_id : NM_013681.1

name	Timp4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110625887 GeneID:110595 MGI:109125
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tissue inhibitor of metalloproteinase 4 transcript_id : NM_080639.3

name	Pparg (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142367023 GeneID:19016 MGI:97747
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : peroxisome proliferator activated receptor gamma transcript_id : NM_011146.2

name	Tsen2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:39841064 GeneID:381802 MGI:2141599
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tRNA splicing endonuclease 2 homolog (SEN2, S. cerevisiae) transcript_id : NM_199033.1

name	2510049J12Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94378035 GeneID:70291 MGI:1917541
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 ESTs, 1 Protein product : RIKEN cDNA 2510049J12 gene, transcript variant 1 transcript_id : XM_132808.3

name	Mkrn2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:88853569 GeneID:67027 MGI:1914277
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : makorin, ring finger protein, 2 transcript_id : NM_023290.2

name	Raf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142380030 GeneID:110157 MGI:97847
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : v-raf-leukemia viral oncogene 1 transcript_id : NM_029780.3

name	Tmem40 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21450166 GeneID:94346 MGI:2137870
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 40 transcript_id : NM_144805.1

name	EG620848 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149255269 GeneID:620848 MGI:3645704
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 147 ESTs, 22 Proteins product : predicted gene, EG620848 transcript_id : XM_885235.3

name	Cand2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:41281586 GeneID:67088 MGI:1914338
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cullin-associated and neddylation-dissociated 2 (putative) transcript_id : NM_025958.1

name	Rpl32 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142350300 GeneID:19951 MGI:98038
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal protein L32 transcript_id : NM_172086.2

name	BC060267 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38348451 GeneID:212516 MGI:2681834
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC060267 transcript_id : NM_198603.1

name	Mbd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754651 GeneID:17193 MGI:1333850
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : methyl-CpG binding domain protein 4 transcript_id : NM_010774.1

name	Ift122 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802332 GeneID:81896 MGI:1932386
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : intraflagellar transport 122 homolog (Chlamydomonas) transcript_id : NM_031177.2

name	Rho (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21717804 GeneID:212541 MGI:97914
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : rhodopsin transcript_id : NM_145383.1

name	H1foo (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129974 GeneID:171506 MGI:2176207
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : H1 histone family, member O, oocyte-specific transcript_id : NM_138311.2

name	Plxnd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142347282 GeneID:67784 MGI:2154244
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : plexin D1 transcript_id : NM_026376.2

name	Tmcc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94378039 GeneID:330401 MGI:2442368
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 50 ESTs, 5 Proteins product : transmembrane and coiled coil domains 1, transcript variant 2 transcript_id : XM_892747.2

name	Slc6a11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370360 GeneID:243616 MGI:95630
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005332 - gamma-aminobutyric acid:sodium symporter activity [Evidence IEA]; GO:0005328 - neurotransmitter:sodium symporter activity [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA] GO_process : GO:0006836 - neurotransmitter transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : gamma-aminobutyric acid (GABA-A) transporter 4 protein_id : NP_766478.1

name	Slc6a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30520131 CCDS:CCDS20434.1 GeneID:232333 MGI:95627
definition	GO_component : GO:0030424 - axon [Evidence IDA]; GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005328 - neurotransmitter:sodium symporter activity [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA] GO_process : GO:0006836 - neurotransmitter transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : gamma-aminobutyric acid (GABA-A) transporter 1 product : solute carrier family 6 (neurotransmitter transporter, GABA), member 1 protein_id : NP_848818.1

name	Hrh1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542963 CCDS:CCDS20435.1 GeneID:15465 MGI:107619
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0048511 - rhythmic process [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : Bordetella pertussis induced histamine sensitization; Histamine H1 receptor product : histamine receptor H 1 protein_id : NP_032311.2

name	Atg7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22550098 GeneID:74244 MGI:1921494
definition	GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004839 - ubiquitin activating enzyme activity [Evidence IDA] GO_process : GO:0006914 - autophagy [Evidence TAS]; GO:0031401 - positive regulation of protein modification [Evidence IDA] [Evidence ISS]; GO:0006497 - protein amino acid lipidation [Evidence ISS]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : autophagy 7-like; autophagy-related 7-like product : AGP7 protein_id : NP_083111.1

name	Vgll4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244116 CCDS:CCDS20436.1 GeneID:232334 MGI:2652840
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : vestigial like 4 protein_id : NP_808351.1

name	1500001M20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:76559944 CCDS:CCDS20437.1 GeneID:68971 MGI:1916221
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_process : GO:0006605 - protein targeting [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : MMP37-like protein, mitochondrial protein_id : NP_081170.1

name	Syn2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:8567410 GeneID:20965 MGI:103020
definition	GO_component : GO:0045202 - synapse [Evidence IDA]; GO:0008021 - synaptic vesicle [Evidence IEA]; GO:0030672 - synaptic vesicle membrane [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence TAS] GO_process : GO:0007269 - neurotransmitter secretion [Evidence IMP] [Evidence IGI] codon_start : 1 note : synapsin 2; Synapsin IIa; Synapsin IIb product : synapsin II protein_id : NP_038709.1

name	Timp4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625888 CCDS:CCDS20438.1 GeneID:110595 MGI:109125
definition	GO_component : GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]; GO:0008021 - synaptic vesicle [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0004857 - enzyme inhibitor activity [Evidence IEA]; GO:0008191 - metalloendopeptidase inhibitor activity [Evidence IEA] GO_process : GO:0007269 - neurotransmitter secretion [Evidence IEA] codon_start : 1 product : tissue inhibitor of metalloproteinase 4 protein_id : NP_542370.3

name	Pparg (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755138 CCDS:CCDS20439.1 GeneID:19016 MGI:97747
definition	GO_component : GO:0005829 - cytosol [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA]; GO:0017053 - transcriptional repressor complex [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IDA] [Evidence IPI]; GO:0004879 - ligand-dependent nuclear receptor activity [Evidence TAS]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA]; GO:0016563 - transcriptional activator activity [Evidence IDA]; GO:0016564 - transcriptional repressor activity [Evidence IMP] [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0045165 - cell fate commitment [Evidence IGI]; GO:0030855 - epithelial cell differentiation [Evidence IGI]; GO:0045444 - fat cell differentiation [Evidence IGI] [Evidence IDA]; GO:0006954 - inflammatory response [Evidence TAS]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045892 - negative regulation of transcription, DNA-dependent [Evidence IMP]; GO:0045941 - positive regulation of transcription [Evidence IDA]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045598 - regulation of fat cell differentiation [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : peroxisome proliferator activated receptor gamma 2 product : peroxisome proliferator activated receptor gamma protein_id : NP_035276.1

name	Tsen2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39841065 CCDS:CCDS20440.1 GeneID:381802 MGI:2141599
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0000214 - tRNA-intron endonuclease complex [Evidence IEA] GO_function : GO:0004519 - endonuclease activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004518 - nuclease activity [Evidence IEA]; GO:0000213 - tRNA-intron endonuclease activity [Evidence IEA] GO_process : GO:0006397 - mRNA processing [Evidence IEA]; GO:0008033 - tRNA processing [Evidence IEA]; GO:0006388 - tRNA splicing [Evidence IEA] codon_start : 1 product : tRNA splicing endonuclease 2 homolog protein_id : NP_950198.1

name	2510049J12Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20831077 GeneID:70291 MGI:1917541
definition	codon_start : 1 product : hypothetical protein LOC70291 isoform 1 protein_id : XP_132808.1

name	Mkrn2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:88853570 GeneID:67027 MGI:1914277
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005622 - intracellular [Evidence ISS] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : makorin, ring finger protein, 2 (MGD\|MGI:1914277 GB\|NM_023290, evidence: BLASTN, 99%, match=2209); putative; Makorin RING zinc-finger protein 2 product : makorin, ring finger protein, 2 protein_id : NP_075779.2

name	Raf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18497290 CCDS:CCDS20441.1 GeneID:110157 MGI:97847
definition	GO_component : GO:0005829 - cytosol [Evidence TAS]; GO:0005622 - intracellular [Evidence IEA]; GO:0005886 - plasma membrane [Evidence TAS] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0019992 - diacylglycerol binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence TAS]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0005057 - receptor signaling protein activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IMP] [Evidence IGI]; GO:0050875 - cellular physiological process [Evidence IEA]; GO:0007010 - cytoskeleton organization and biogenesis [Evidence IMP]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007243 - protein kinase cascade [Evidence TAS]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : sarcoma 3611 oncogene; murine sarcoma 3611 oncogene 1; v-raf-1 leukemia viral oncogene 1; Craf1 transforming product : protein kinase raf 1 protein_id : NP_084056.1

name	Tmem40 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450167 GeneID:94346 MGI:2137870
definition	codon_start : 1 exception : mismatches in translation product : transmembrane protein 40 protein_id : NP_659054.1

name	EG620848 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94378038 GeneID:620848 MGI:3645704
definition	codon_start : 1 product : hypothetical protein protein_id : XP_890328.2

name	Cand2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:41281587 CCDS:CCDS20442.1 GeneID:67088 MGI:1914338
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0017025 - TATA-binding protein binding [Evidence IDA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 exception : mismatches in translation product : TBP-interacting protein b protein_id : NP_080234.1

name	Rpl32 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:25742730 CCDS:CCDS20443.1 GeneID:19951 MGI:98038
definition	GO_component : GO:0005842 - cytosolic large ribosomal subunit (sensu Eukaryota) [Evidence IDA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0003735 - structural constituent of ribosome [Evidence IDA] GO_process : GO:0006412 - protein biosynthesis [Evidence IDA] codon_start : 1 note : snoRNA MBI-141 product : ribosomal protein L32 protein_id : NP_742083.1

name	BC060267 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38348452 GeneID:212516 MGI:2681834
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC212516 protein_id : NP_941005.1

name	Mbd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754652 GeneID:17193 MGI:1333850
definition	GO_component : GO:0000785 - chromatin [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0006284 - base-excision repair [Evidence IEA]; GO:0008630 - DNA damage response, signal transduction resulting in induction of apoptosis [Evidence IMP]; GO:0006306 - DNA methylation [Evidence TAS]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IMP]; GO:0009314 - response to radiation [Evidence IMP] codon_start : 1 exception : mismatches in translation product : methyl-CpG binding domain protein 4 protein_id : NP_034904.1

name	Ift122 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30794218 CCDS:CCDS20445.1 GeneID:81896 MGI:1932386
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0019861 - flagellum [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : WD repeat domain 10 protein_id : NP_112454.1

name	Rho (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21717805 CCDS:CCDS20446.1 GeneID:212541 MGI:97914
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0001750 - photoreceptor outer segment [Evidence IDA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0009583 - detection of light stimulus [Evidence IMP]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007602 - phototransduction [Evidence IEA]; GO:0018298 - protein-chromophore linkage [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]; GO:0007601 - visual perception [Evidence IEA] codon_start : 1 note : L opsin; LWS opsin; Red Opsin; Rod Opsin; Long Wavelength Sensitive opsin; opsin 2 product : rhodopsin protein_id : NP_663358.1

name	H1foo (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19923865 CCDS:CCDS20447.1 GeneID:171506 MGI:2176207
definition	GO_component : GO:0001674 - female germ cell nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence ISS] [Evidence IEA] GO_process : GO:0006334 - nucleosome assembly [Evidence IEA] [Evidence ISS]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : H1 histone family, member O (oocyte-specific); H1 histone family, member O, oocyte-specific) product : H1 histone family, member O, oocyte-specific protein_id : NP_612184.1

name	Plxnd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037103 CCDS:CCDS20448.1 GeneID:67784 MGI:2154244
definition	GO_component : GO:0005886 - plasma membrane [Evidence IC] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0017154 - semaphorin receptor activity [Evidence IPI] GO_process : GO:0007275 - development [Evidence IEA]; GO:0001569 - patterning of blood vessels [Evidence IMP] codon_start : 1 exception : mismatches in translation product : plexin D1 protein_id : NP_080652.1

name	Tmcc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83029742 GeneID:330401 MGI:2442368
definition	codon_start : 1 product : transmembrane and coiled coil domains 1 isoform 2 protein_id : XP_897840.1

name	LOC100043420 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043420
definition	number : 1 pseudo : _no_value

name	LOC100043420 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043420
definition	number : 2 pseudo : _no_value

name	(CDS detail)
type	STS
link
xref	UniSTS:142586
definition	standard_name : D6Mit30

name	(CDS detail)
type	STS
link
xref	UniSTS:130935
definition	standard_name : D6Mit383

name	(CDS detail)
type	STS
link
xref	UniSTS:130883
definition	standard_name : D6Mit329

name	(CDS detail)
type	STS
link
xref	UniSTS:143159
definition	standard_name : Gabt4

name	(CDS detail)
type	STS
link
xref	UniSTS:143158
definition	standard_name : Gabt4

name	(CDS detail)
type	STS
link
xref	UniSTS:130957
definition	standard_name : D6Mit55

name	(CDS detail)
type	STS
link
xref	UniSTS:143155
definition	standard_name : Gabt1

name	(CDS detail)
type	STS
link
xref	UniSTS:130965
definition	standard_name : D6Mit63

name	(CDS detail)
type	STS
link
xref	UniSTS:123239
definition	standard_name : 15.MHAa10f3.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:123901
definition	standard_name : 30.MMHAP30FLB6.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:167492
definition	standard_name : D6Ertd47e

name	(CDS detail)
type	STS
link
xref	UniSTS:163124
definition	standard_name : RH126416

name	(CDS detail)
type	STS
link
xref	UniSTS:221502
definition	standard_name : RH139416

name	(CDS detail)
type	STS
link
xref	UniSTS:159559
definition	standard_name : AI449595

name	(CDS detail)
type	STS
link
xref	UniSTS:144530
definition	standard_name : Syn2

name	(CDS detail)
type	STS
link
xref	UniSTS:123986
definition	standard_name : 32.MMHAP4FRC11.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:235524
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:125626
definition	standard_name : Results_H8_11_95_11.55_AM42.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:130920
definition	standard_name : D6Mit366

name	(CDS detail)
type	STS
link
xref	UniSTS:123833
definition	standard_name : RH118303

name	(CDS detail)
type	STS
link
xref	UniSTS:147599
definition	standard_name : D3S732

name	(CDS detail)
type	STS
link
xref	UniSTS:163397
definition	standard_name : AF096867

name	(CDS detail)
type	STS
link
xref	UniSTS:246722
definition	standard_name : BI295795

name	(CDS detail)
type	STS
link
xref	UniSTS:164338
definition	standard_name : AI836018

name	(CDS detail)
type	STS
link
xref	UniSTS:179441
definition	standard_name : AI841723

name	(CDS detail)
type	STS
link
xref	UniSTS:144528
definition	standard_name : Syn2

name	(CDS detail)
type	STS
link
xref	UniSTS:186027
definition	standard_name : BB157820

name	(CDS detail)
type	STS
link
xref	UniSTS:271631
definition	standard_name : PMC171387P3

name	(CDS detail)
type	STS
link
xref	UniSTS:271629
definition	standard_name : PMC171387P1

name	(CDS detail)
type	STS
link
xref	UniSTS:271630
definition	standard_name : PMC171387P2

name	(CDS detail)
type	STS
link
xref	UniSTS:179440
definition	standard_name : AU067695

name	(CDS detail)
type	STS
link
xref	UniSTS:235526
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:208014
definition	standard_name : RH127069

name	(CDS detail)
type	STS
link
xref	UniSTS:469819
definition	standard_name : Raf1

name	(CDS detail)
type	STS
link
xref	UniSTS:160660
definition	standard_name : AA990557

name	(CDS detail)
type	STS
link
xref	UniSTS:185679
definition	standard_name : BB129353

name	(CDS detail)
type	STS
link
xref	UniSTS:259519
definition	standard_name : Raf1

name	(CDS detail)
type	STS
link
xref	UniSTS:270498
definition	standard_name : PMC125416P1

name	(CDS detail)
type	STS
link
xref	UniSTS:130964
definition	standard_name : D6Mit62

name	(CDS detail)
type	STS
link
xref	UniSTS:130964
definition	standard_name : D6Mit62

name	(CDS detail)
type	STS
link
xref	UniSTS:165483
definition	standard_name : AV091463

name	(CDS detail)
type	STS
link
xref	UniSTS:218442
definition	standard_name : RH135165

name	(CDS detail)
type	STS
link
xref	UniSTS:235528
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:268736
definition	standard_name : MARC_23652-23653:1029502677:1

name	(CDS detail)
type	STS
link
xref	UniSTS:11774
definition	standard_name : D3S2347

name	(CDS detail)
type	STS
link
xref	UniSTS:185681
definition	standard_name : BB124106

name	(CDS detail)
type	STS
link
xref	UniSTS:163398
definition	standard_name : AF072249

name	(CDS detail)
type	STS
link
xref	UniSTS:270832
definition	standard_name : PMC137523P1

name	(CDS detail)
type	STS
link
xref	UniSTS:143837
definition	standard_name : Mbd4

name	(CDS detail)
type	STS
link
xref	UniSTS:179442
definition	standard_name : C86139

name	(CDS detail)
type	STS
link
xref	UniSTS:468014
definition	standard_name : Rho

name	(CDS detail)
type	STS
link
xref	UniSTS:130950
definition	standard_name : D6Mit44

name	(CDS detail)
type	STS
link
xref	UniSTS:271644
definition	standard_name : PMC17675P2

name	(CDS detail)
type	STS
link
xref	UniSTS:208018
definition	standard_name : BB282502

name	(CDS detail)
type	STS
link
xref	UniSTS:159561
definition	standard_name : M55171

name	(CDS detail)
type	STS
link
xref	UniSTS:208016
definition	standard_name : RH126702

name	(CDS detail)
type	STS
link
xref	UniSTS:208017
definition	standard_name : RH127285

name	(CDS detail)
type	STS
link
xref	UniSTS:32813
definition	standard_name : D12S1329

name	LOC666491 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149255399 GeneID:666491
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 3 Proteins product : similar to Ac2-008 pseudo : _no_value transcript_id : XR_034873.1

name	LOC100043759 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149255400 GeneID:100043759
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 56 ESTs, 9 Proteins product : similar to RNA polymerase II TATA box binding protein-associated factor G pseudo : _no_value transcript_id : XR_034896.1

name	D830050J10Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149255268 GeneID:352968 MGI:2444203
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 19 ESTs product : RIKEN cDNA D830050J10 gene transcript_id : XR_035449.1

clone name	MSMg01-448E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-052G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-216M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-117P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-089J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-102D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-055C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-076L21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-478I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404C03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-125J04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-354J17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-406C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531B17
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-416F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-138A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-366F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-413H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-379M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-444M08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304F08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547D05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-534I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-058G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-121M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-360B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-078H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-450M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-444D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-081K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-174E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-174E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-478M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543D17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-056N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-212P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-086B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-471G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496O24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230O09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176A16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-209I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170P03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222A11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-296I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-037O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169D20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037F23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-163K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-213L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-314M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205P06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202L18
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-413H11.T7 (MSMg01no413_h11.b1)	MSMg01-413H11.TJ (MSMg01no413_h11.g1)
ACC	AG509994	AG509995
length	740	1,143
length of high quality (start - end)	618 (36 - 653)	---
definition	CHROMAT_FILE: MSMg01no413_h11.b1 PHD_FILE: MSMg01no413_h11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:09 2005	CHROMAT_FILE: MSMg01no413_h11.g1 PHD_FILE: MSMg01no413_h11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:09 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTACA TATTGCTAATGGAAAAGAATTTGATAGTGGTTACCAAAATGGGACATACA TGTGCCCAACAACAACAACAACAACACAATAACAACAACAACAACAAAAG CCATGACGACACTGATGCAGTGATATTCACAACAATACTAACTGAAGTGA TCATGAGGAAATAACCTGAAAGTCTACCTGAGCAGAGTGGAAGATTGTGA GCAGTTGGTGTCACGGAATACTGGACAGGAGGAGAAAGAGGGAGTGCGCC ATTGCTCTCTGATTTATCACAACTGGCTTTGAAGAAGAAACCAAGAGGGT TTAATAAGAACTGGCTTGGTTTTGTTTTATTTTGGTGCTAGAGTTTACAC CCAGGGCCTTGTGCATGCTGGGAACTAGCTAAGTGTCCTGCTGAGCCATA ACCAGGAGCTTGCTTGTAAACTTGCTAGTGAGCTGGATCCTAGCCCAAAT AGATGGATGCAAGCAAATAGGTGAACTTGGAATCTACTACAGAATCCAGT CATTGCTTAGCTCATTAGCTAGCTCTAACCCTCAGGGAAGAGGTTTTCTC ATTAGCTTACAAAGACTTAAAAAAAAAAAAAAAAAAAGGAAATTGAAATC CTTGTTTTCTTGCTTTGCTAACCTGTTGGCCATCTGAAAACCTGAAGTCT GCCACCAGCTCTGTGCTTGCTGCGGCTCTCAGCCAGACTN	TATTCTTCCTACGTGCATTTCACTATTCTCTCTCTCTAACGAATTAGAAT GATCTATCAACTTAATTTTTCCCCCACCAATTCTCCCTTCATTTATTTAT CCCCTTCCAGTCTAAATGCTATCACATGTCTCCTTATTTTGATTCGCGCC CCTGCGCTCTCTGTTCTCCTTGGTGTTTTTTCTCCCTCGTATAAAACATA TATTTAAGTGGCTGCCACACACCTCTAATCATGTTATAATTGTATCCCCC CGNCGGAGATAAATATTTCCGCCCGGCTAATACCTTATCTTCTCTATTTT TTTGTTAATGGTGTTTCTATGTACTATGGGGTGTAAAATTCAAATGGTGG GGTCCTTTTTAAATCTCGGGTTCTACTAAAAAATGTGGCTTCTCCCCTCC CTGAACTTTGTAAAAATAAGGTTGTTAAGCAACCCTTAAGGTGTATTCTC TTTTTTAAAGTNTGGGAATGATAAACACAACTTTTGTGGGGCGGGGCTAC ACGAGGGGAAGAACACCTATGTCGTGTTACTCACCCCTTCTCACAAATAA AAAACATCTTCTTGCTCGTTGTGTGGGTATCTCTTTCGGTAGAGGGCGCA TCTTACAATATCCTTTGTGGCGTTCAGTGTGGTTGGTCATAACCTCCCCC CGTGGGCGGTCTAAAAATTATTGTGGCGCATATATTGTGGGGGCTCGCTA TTTATCTTCACGTAAGTAAAAAAAGATTCATTTCATCACCTCCCTTACAT TTTTTTTTTAATATTAACTCTTCTGCTACTACTGCATCTTTATATCTATC CAATACACCACTATTGTCGGTTGTGTCGTTTGTGATCTCAATATTTACAC CATCGCCTTTCGTTTTCTCCTCTGCGGGCGCGAACGATATCAATATCTAT GTATTTTTGTTTCTCTTCCTCCCTCTCTATATTTATATTTCGTTTTTTCT ACATCGTGCCTATATCTCTGTCTTCCGTTGTCGCCGCTTCTCGACCATAT TACTCTTCACATTTCTCTATCATCTTTGTTATTGCCGCGTGTGGCTTTGC CGCTTTGAGCAATACTTATCATAATTTCAANTCACGCCGATCTCATACTA TGTTGTGAGTTCCATATATGTATTTTGTTATTTCCTATCTCCT
quality values	Open. Hide. 10 10 21 17 18 12 19 10 10 10 19 19 41 44 46 26 22 19 19 12 21 12 10 11 12 9 9 9 12 12 19 19 21 32 33 33 43 48 48 36 36 36 36 50 50 57 43 47 25 25 11 17 16 18 18 13 15 15 23 23 28 28 37 43 59 59 47 47 41 41 41 42 51 50 50 50 51 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 50 50 50 50 50 50 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 68 68 68 57 57 57 57 57 57 68 68 68 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 68 68 50 51 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 42 39 37 37 57 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 54 54 54 54 54 68 68 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 59 59 59 59 59 59 59 59 28 28 14 14 12 8 8 8 8 8 15 25 40 41 41 50 59 59 59 59 59 59 59 59 59 59 59 59 59 59 57 57 57 53 48 48 54 57 59 68 68 68 68 68 68 68 68 59 59 54 54 48 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 59 59 68 68 68 68 68 68 68 57 68 68 68 68 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 68 68 68 68 68 68 68 57 59 68 68 68 68 68 68 57 57 57 57 57 59 59 68 68 57 57 57 54 54 57 59 59 68 68 59 59 57 57 57 59 59 59 59 68 57 57 57 57 57 57 59 59 59 59 68 59 59 59 59 59 59 59 59 59 59 59 59 54 48 48 57 57 59 57 57 57 48 48 37 43 37 48 39 41 39 41 41 44 43 50 43 59 47 41 43 41 41 41 41 39 39 35 31 31 36 39 30 30 11 15 10 12 12 25 32 41 41 46 46 32 32 24 30 37 39 34 34 25 25 25 34 34 41 41 39 39 34 34 43 59 59 59 59 59 59 50 48 48 37 37 37 37 37 37 43 41 37 31 31 37 37 37 32 31 32 41 37 37 25 20 18 16 14 14 23 23 19 19 16 11 10 9 11 19 19 30 37 29 29 29 16 14 8 8 8 9 8 13 10 17 24 36 37 15 9 8 8 8 8 9 17 16 13 11 10 19 16 28 21 12 11 14 9 11 10 15 20 22 24 28 20 20 20 26 26 21 15 15 19 15 13 15 15 15 12 18 16 16 9 12 12 14 15 10 8 8 3 0	Open. Hide. 8 8 8 8 9 13 13 9 9 9 9 9 8 8 12 12 6 6 8 8 8 8 8 8 6 6 6 8 8 8 8 7 7 9 6 8 8 10 8 8 7 7 7 7 6 7 10 8 8 8 8 8 8 8 8 8 8 9 9 9 10 11 9 11 11 12 12 20 22 18 16 11 11 8 8 6 6 6 6 8 6 8 8 11 8 9 8 10 8 10 10 9 9 9 9 8 6 6 6 8 8 8 8 10 13 10 8 8 8 8 8 8 8 10 6 8 6 6 8 6 7 10 6 9 9 10 9 7 10 7 7 8 8 8 10 24 22 7 10 6 6 6 6 10 8 6 6 6 6 8 7 8 8 8 8 8 8 8 8 8 10 10 6 6 6 6 8 8 9 10 10 6 6 6 6 9 7 13 17 9 8 8 8 8 8 11 8 8 8 8 9 11 10 8 8 6 6 6 6 8 8 8 6 10 6 6 6 8 6 6 6 6 8 8 6 8 6 6 6 10 19 10 10 7 6 6 6 6 8 10 9 9 9 6 6 6 6 6 6 8 6 8 8 8 11 11 11 18 9 8 8 3 0 3 8 8 10 11 10 10 6 6 6 6 6 11 17 17 12 9 9 9 10 10 8 8 10 8 6 6 6 6 8 8 8 8 8 10 10 8 13 10 10 10 15 10 10 19 12 12 12 9 9 9 9 11 12 13 18 10 9 9 9 9 10 10 8 8 10 8 8 8 6 7 7 8 10 10 11 8 9 9 8 10 8 16 16 11 11 11 11 11 11 11 8 6 6 6 11 7 17 18 19 15 14 11 9 9 9 9 7 7 6 11 11 11 12 8 9 8 8 8 8 8 8 11 9 9 11 12 15 18 18 13 10 8 8 8 8 8 10 10 12 11 12 11 11 11 9 10 8 8 8 8 8 8 8 8 7 7 6 6 6 10 16 11 8 8 8 8 10 10 9 9 9 9 8 6 6 6 6 8 8 10 12 12 10 9 10 10 10 8 6 6 6 6 8 8 8 8 8 8 11 9 9 9 9 9 9 9 3 0 3 8 8 8 6 8 7 6 7 8 8 10 10 8 8 8 8 8 10 16 15 13 8 8 8 8 7 8 8 8 8 8 12 10 8 8 6 6 8 8 10 9 9 13 11 13 9 9 9 9 10 6 6 6 6 8 8 8 8 8 10 8 9 10 10 10 10 8 13 8 9 9 9 8 10 8 8 8 8 8 8 8 10 10 8 8 8 8 14 11 9 8 8 8 8 8 10 8 9 9 14 11 7 7 6 6 8 8 8 8 8 8 8 10 16 13 10 10 11 11 16 12 10 10 13 10 9 9 9 9 9 8 10 8 10 6 6 8 6 8 8 8 10 10 11 12 15 15 10 10 10 8 8 8 9 6 6 6 6 8 10 15 9 11 11 8 8 7 6 8 8 10 8 8 7 6 6 6 8 8 8 10 10 13 11 9 10 10 9 9 9 9 13 10 7 6 9 9 12 9 9 10 7 8 8 8 10 10 13 10 10 9 9 10 9 9 12 10 13 8 8 8 10 8 8 9 10 10 10 10 7 8 8 8 8 8 8 8 10 8 9 12 8 8 8 10 8 10 9 9 9 9 6 8 8 7 7 15 11 9 10 6 6 8 8 10 10 10 9 13 8 6 6 6 8 10 11 11 13 11 8 8 10 11 10 10 11 16 11 12 25 29 33 25 19 19 14 13 10 11 8 8 6 6 8 10 8 8 8 8 6 6 6 8 6 8 8 8 8 8 8 6 8 6 6 6 10 16 8 8 7 7 7 12 11 10 10 10 8 8 8 8 8 9 10 13 9 8 8 8 8 8 8 8 8 8 8 8 8 12 9 9 8 8 8 10 10 8 8 8 8 8 8 8 11 10 12 12 10 11 6 6 6 8 9 13 8 10 8 8 8 8 8 8 6 6 8 8 8 8 8 8 8 8 8 8 8 10 12 10 10 10 12 11 11 8 8 8 10 10 8 11 11 10 10 10 13 10 10 13 10 10 8 8 8 8 11 6 6 6 8 9 11 11 12 9 9 9 15 22 16 14 14 11 11 10 13 9 9 9 14 13 16 19 20 10 11 11 11 10 8 8 8 8 8 8 8 8 8 8 8 10 10 11 10 8 8 8 8 8 8 8 10 10 12 12 11 11 9 9 8 8 8 8 8 8 10 13 10 10 11 15 8 8 6 6 8 6 9 10 9 9 9 9 6 10 10 8 8 8 8 8 8 8 7 11 6 6 6 6 8 8 10 10 13 10 9 10 9 9 10 12 12 9 12 11 8 8 7 8 8 7 7 10 6 7 9 8 8 8 8 10 10 9 8 10 11 10 10 8 10 10 10 9 8 8 6 6 6 6 8 8 11 10 6 8 6 7 8 8 8 8 8 8 8 8 8 6 8 7 7 6 6 8 13 9 8 3 0 3 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 7 9 8 8 7 7 6 7 6 6 6 8 8 8 8 6 6 6 8 8 8 9 6 7 7 7 8 13 8 8 8 8 9 9 12 10 10 9 6 6 6 6 8 8 6 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no413_h11.b1 MSMg01no413_h11.b1 CHROMAT_FILE:
MSMg01no413_h11.b1 PHD_FILE: MSMg01no413_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:09 2005
         (618 letters)



>mm_chr6_115019548_115020565
          Length = 1018

 Score = 1011 bits (523), Expect = 0.0
 Identities = 595/641 (92%), Gaps = 36/641 (5%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttacatattgctaatggaaaagaatttgatagtggttaccaaaatgggacata 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ggaattcttacatattgctaatggaaaagaatttgatagtggttaccaaaatgggacata 239

                                                                       
Query: 64  catgtgcccaacaacaacaacaacaaca------------------------caataaca 99
           ||||||||||||||||||||||||||||                        ||| ||||
Sbjct: 240 catgtgcccaacaacaacaacaacaacaacaacacaacaacaacaacaacaacaacaaca 299

                                                                       
Query: 100 acaacaacaacaaaagccatgacgacactgatgcagtgatattcacaacaatactaactg 159
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 acaacaacaacaaaagccatgacgacactgatgcagtgatattcacaacaatactaactg 359

                                                                       
Query: 160 aagtgatcatgaggaaataacctgaaagtctacctgagcagagtggaagattgtgagcag 219
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 360 aagtgatcatgaggaaataacctgaaagtctacctgagcagagtggaagattgtgagcgg 419

                                                                       
Query: 220 ttggtgtcacggaatactggacaggaggagaaagagggagtgcgccattgctctctgatt 279
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 420 ttggtgtcacggaatactggacaggaggagaaagagggagtgcgccattgctctctgaaa 479

                                                                       
Query: 280 tatcacaactggctttgaagaagaaaccaagagggtttaataagaactggcttggttttg 339
            |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 480 catcacaactggctttgaagaagaaaccaagagggtttattaagaactggcttgtttttg 539

                                                                       
Query: 340 ttttattttggtgctagagtttacacccagggccttgtgcatgctgggaactagctaagt 399
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ttttattttggtgctagagtttacacccagggccttgtgcatgctgggaactagctaagt 599

                                                                       
Query: 400 gtcctgctgagccataaccaggagcttgcttgtaaacttgctagtgagctggatcctagc 459
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 600 gtcctgctgagccataaccaggagcttgcttgtaaacttgctagtgagctggatcccagc 659

                                                                       
Query: 460 ccaaatagatggatgcaagcaaataggtgaacttggaatctactacagaatccagtcatt 519
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ccaaatggatggatgcaagcaaataggtgaacttggaatctactacagaatccagtcatt 719

                                                                       
Query: 520 gcttagctcattagctagctctaaccctcagggaagaggttttctcattagcttacaaag 579
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gctaagctcattagctagctctaaccctcagggaagaggttttctcattagcttacaaag 779

                                                    
Query: 580 actt--aaaaaaaaaaaaaaaaaaaggaaattgaaatcctt 618
           ||||  |||||||||          ||||||||||||||||
Sbjct: 780 acttccaaaaaaaaa----------ggaaattgaaatcctt 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information