Query= MSMg01no413_l20.b1 MSMg01no413_l20.b1 CHROMAT_FILE:
MSMg01no413_l20.b1 PHD_FILE: MSMg01no413_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:30 2005
(595 letters)
>mm_chr6_60981784_60982778
Length = 995
Score = 1040 bits (538), Expect = 0.0
Identities = 577/594 (97%), Gaps = 7/594 (1%)
Strand = Plus / Plus
Query: 9 gaattccttcaccgtgtgcagacagtaaaacattgccatcagtgactcaggaagcatttc 68
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 202 gaattccttcaccgtgtaaagacagtaaaacattgccatcagtgactcaggaagcagttc 261
Query: 69 tcctcagatccaccaagtgacctcgga-------cttcaagacagacctatggaaaacaa 121
||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 262 tcctcagatccaccaagtgacctcggacttctggcttcaagacagacctatggaaaacaa 321
Query: 122 agttcagttgtttataagcgctggtctaggatgttctgtttcagttgccccggtggactg 181
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 322 agttcaattgtttataagcgctggtctaggatgttctgtttcagttgacccggtggactg 381
Query: 182 aaatattcatgcacatcttttttatttaattataatctagaaacaggttgcttgctatta 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaatattcatgcacatcttttttatttaattataatctagaaacaggttgcttgctatta 441
Query: 242 aaatttctatagcagcttattcattttaagttaaatataataaataatgtaaagtaattg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaatttctatagcagcttattcattttaagttaaatataataaataatgtaaagtaattg 501
Query: 302 tactttaaagggaagtgggaaagatggctaatgtggagggacctcaaaaactcacagaag 361
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 502 tacttgaaagggaagtgggaaagatgactaatgtggagggacctcaaaaactcacagaag 561
Query: 362 agttgtatggaagcctggtggtggtgcacacccctttaatcccagcactagggaggcagg 421
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 agttgtatggaagcctggtggtggtgcacacccctttaatcccagcactagggaggcaga 621
Query: 422 ttcaggaggatctctgtgaattcaagtccagcctggaatagagaactagttctaggatag 481
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttcaggaagatctctgtgaattcaagtccagcctggaatagagaactagttctaggatag 681
Query: 482 tcaaggctacacaaagtaaccaagtgacacgatagttttgtaaagcacactatggtgtgg 541
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 682 tcaaggctacacaaagtaaccaagtgacatgatagttttgtaaagcacactatggtgtgg 741
Query: 542 tggaaagggtacctcagccagcccatgttgaagcatccatcttgagaagggagg 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tggaaagggtacctcagccagcccatgttgaagcatccatcttgagaagggagg 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_l20.g1 MSMg01no413_l20.g1 CHROMAT_FILE:
MSMg01no413_l20.g1 PHD_FILE: MSMg01no413_l20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:30 2005
(503 letters)
>mm_chr6_61157526_61158428
Length = 903
Score = 951 bits (492), Expect = 0.0
Identities = 500/503 (99%)
Strand = Plus / Minus
Query: 1 tcacaacttgcccgaccacatgacaggatgagactgaagccctgacaatgatgagtcact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tcacaacttgcccgaccacatgacaggatgagactgaagccctgacaatgatgagtcact 644
Query: 61 ttaggttgtgactgtaccttgacaaaatggcggaaggactgggagtaggtggggtagtag 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 643 ttaggttgtgactgtaccttgacaaaatggcggaaggactgggagtaggcggggtagtag 584
Query: 121 cactcagcttcagaagtccttggcccctattaaactttgttcttgcttcaggactttaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 cactcagcttcagaagtccttggcccctattaaactttgttcttgcttcaggactttaaa 524
Query: 181 gatggacttggggtggggggtgctgggtacctttgcccatcttcctgacattgtcatatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gatggacttggggtggggggtgctgggtacctttgcccatcttcctgacattgtcatatt 464
Query: 241 gaataaatgtccattttctgctttctactactttttattgggctcttttattgggttatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gaataaatgtccattttctgctttctactactttttattgggctcttttattgggttatt 404
Query: 301 gagggtaggtagtcagatctgagtttcaacccttagttgaaacttttccaagttcaataa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gagggtaggtagtcagatctgagtttcaacccttagttgaaacttttccaagttcaataa 344
Query: 361 catcgccccttgatagtctattatcttctctcagaaggagcattgctgttactaaaatta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 catcgccccttgatagtctattatcttctctcagaaggagcattgctgttactaaaatta 284
Query: 421 gcctcaactcatcattcactatgaaactcccaggtaccactaccactcatggnttgtctc 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 283 gcctcaactcatcattcactatgaaactcccaggtaccactaccactcatggtttgtctc 224
Query: 481 cctggaaacaaatctctacatgt 503
||||||||||||||| |||||||
Sbjct: 223 cctggaaacaaatctttacatgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
