Query= MSMg01no414_f12.b1 MSMg01no414_f12.b1 CHROMAT_FILE:
MSMg01no414_f12.b1 PHD_FILE: MSMg01no414_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:21 2005
(548 letters)
>mm_chr6_102554184_102555131
Length = 948
Score = 884 bits (457), Expect = 0.0
Identities = 527/567 (92%), Gaps = 31/567 (5%)
Strand = Plus / Plus
Query: 5 ggaattcaaacttt--attctctgatacacccgtaaagactcctccttttctaagaatct 62
|||||||||||||| || ||||||| |||| |||||||||||||||||||||| ||||
Sbjct: 205 ggaattcaaactttaaat--tctgatatacccataaagactcctccttttctaaggatct 262
Query: 63 ataccatgaatgcacttttctcagacattctggtttgcacagcttgtgtttaattttcct 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ataccatgaatgcacttttctcagacattctggtttgcacagcttgtgtttaattttcct 322
Query: 123 tgtaatgagatattgaaatacattaagtattaaaagatcccacttcgctaagataagaca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgtaatgagatattgaaatacattaagtattaaaagatcccacttcgctaagataagaca 382
Query: 183 ctctaggttataatatcatatttctttttaaatgatcactttgggaattaacaaggtggc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctctaggttataatatcatatttctttttaaatgatcactttgggaattaacaaggtggc 442
Query: 243 tcagcagttagaggtccttgcttgctactcttttatcttatccttactttgtttcctagc 302
||||||||||| ||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct: 443 tcagcagttaggggtccttgcttgctactctttta-cagaaccttactttgtttcctagc 501
Query: 303 attaaggctgagcagttcagaacttcctatttctccagctctggaggtctgacatcctct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 attaaggctgagcagttcagaacttcctatttctccagctctggaggtctgacatcctct 561
Query: 363 tctcatctctgtgagtaccttcatgcacctagtacacacacccaccaccaccaccaccac 422
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tctcatctctgtgagaaccttcatgcacctagtacacacacccaccaccaccaccaccac 621
Query: 423 caccaccaccacaac-a--------------------acaacagtaaaattaaaaactgt 461
|||||||||||| || | |||||||||||||||||||||||
Sbjct: 622 caccaccaccactaccaccaccaccatcaccaccaccacaacagtaaaattaaaaactgt 681
Query: 462 tattgtattaatgtgtttaaatcccattttcttttgttcaaaatgcaaactacaaggaag 521
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tatt-----aatgtgtttaaatcccattttcttttgttcaaaatgcaaactacaaggaag 736
Query: 522 caagtgccttatttgggtttttgctca 548
|||||||||||||||||||||||||||
Sbjct: 737 caagtgccttatttgggtttttgctca 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no414_f12.g1 MSMg01no414_f12.g1 CHROMAT_FILE:
MSMg01no414_f12.g1 PHD_FILE: MSMg01no414_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:21 2005
(491 letters)
>mm_chr6_102725951_102726841
Length = 891
Score = 919 bits (475), Expect = 0.0
Identities = 489/497 (98%), Gaps = 6/497 (1%)
Strand = Plus / Minus
Query: 1 caagaaactacttgggtggttcttattggagaattagaggtttagccctgtaatttggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 caagaaactacttgggtggttcttattggagaattagaggtttagccctgtaatttggcc 501
Query: 61 aaagactgtgtgactgtcctcagaagcagggcaggtagaggtcatgggcaaggttatata 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaagactatgtgactgtcctcagaagcagggcaggtagaggtcatgggcaaggttatata 441
Query: 121 ggctgagagcaggaagagagtagcccttactccccccagtctcaggataaaattctgggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggctgagagcaggaagagagtagcccttactccccccagtctcaggataaaattctgggg 381
Query: 181 gtttggggtacctcccaatctgactattgctccaggccagctcccctggtcaaacatgcc 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtttggggtacctctcaatctgactattgctccaggccagctcccctggtcaaacatgcc 321
Query: 241 ctcagtatttattttcaaaactgaatttttttgtctagcccttgctgtcctggaattcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctcagtatttattttcaaaactgaatttttttgtctagcccttgctgtcctggaattcac 261
Query: 301 tctgtagaccaggctggcctcaaacccacaaaaatctgc------ctgcctctgcctctg 354
||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 260 tctgtagaccaggctggcctcaaacccacaaaaatctgcctgcctctgcctctgcctctg 201
Query: 355 cctcccaagcactggggataaaggcatgcaccaccattctctggctagtcttaattatta 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 cctcccaagcactggggataaaggcatgcaccaccattctctggctagtcttaattatta 141
Query: 415 tagttatacagtccttaaactaggataatgtatgtttcttctaattactcatttataaat 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 tagttatacagtccttaaactaggataatgtatgtttcttctaattactcatttataaat 81
Query: 475 gtagaaatattttgatg 491
|||||||||||||||||
Sbjct: 80 gtagaaatattttgatg 64
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
