BAC Information

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BAC

Clone NameMSMg01-414M18
Chromosome6 (Build37)
Map Location 79,691,394 - 79,691,706
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384440, LOC621815
Downstream geneLOC100043392, Lrrtm4, LOC100043390
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414M18.T7 (MSMg01no414_m18.b1)MSMg01-414M18.TJ (MSMg01no414_m18.g1)
ACCAG511008AG511009
length792752
length of high quality
(start - end)
459 (48 - 506)145 (79 - 223)
definitionCHROMAT_FILE: MSMg01no414_m18.b1 PHD_FILE: MSMg01no414_m18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:57 2005CHROMAT_FILE: MSMg01no414_m18.g1 PHD_FILE: MSMg01no414_m18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCG
CGGAATTCATTTTAATTACCCAAATACTGTATATTATCTCTTGTCTGCCG
TTTGCAATTTTTTCTCTTTCATTTTTAAACTTTACTTTTTAAGGCTTAAA
TATTAATTTGTTTATTTTGAAAAATTCATAAGTGTATGAAGGTATTTTAA
TCATCAGCATCTGTATCCTTCAGCTCCCACTCCTTCCAGATCTCTCTCTC
TCTCTCTCTCTCACACACACACACACACACACACACACACACACACACCA
CATGCATGTCCTTTCTAACTTCATGTCTTCTGGTTTTTACTCACTGAGGC
CAATTGGTGCTTCATTTGCTAGAGCATGAGAAATCTAAAAATGTCTGCAT
CCCTGAAGAAAACCAAATCTCTTTTCTGTAGCATTCACCACCTGTCAATA
GCTACTGGGCTTGTGAGCCCTTCCTTCCTTCATGCTGGAATTATTGTTTC
CTTTCCAGGTTGATGCCCTGGAGATCTTGGTCAGGCAACCACAAATGCTT
GGGATTTGTGCATGGCCATATTTCAGTCTTGTGTTTAAAAAACTAAATTC
TTAAAAAATCTCCCCCGAGTTTAATTCCTTATAACCTTTGGCTTCTTCTC
TCTCTGGCCCTTATCTTTTTATTACTATGATTTCTATTTTGATTATCACC
GGTCTGTGTTTCTTCCTCTCCCCCTTTTTAAACCCGTAACGAATTCTTTT
ACTCACTCTTCCTTTTTTACCACCTTTTCCTCCACTTTTTTT
NNCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGGTCCTATCTAGGATGGT
TCAGGATATGGTGTCTTCACTGGAGCAGACTAGCTAAGAATCTGCCCCAG
TACATAGGATTGGGCAGAGAGGAAAGAAGGGACAGAAGGGGAGTGGTATT
CAGGAGGGTAGGGGTTTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTTTTTTTTNNNNNNNNNTNTNTTTTTTTTTTTTTTTTTTTTTTT
TTTNTTTTTNNTTNNNNNTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTTTTTTCCCCCTCTCCCCCCTTTTTCTTTTTTTCTTTT
TCTTCTTCCTCCCCCCCCCTTTTTTTTTTTTTTCCCCCCCTCCTTCCTTT
TTTTCTTTTCTTCTTTCTTTTCTTCTTCTTTTCCTCTCCTTCTCTCTTTT
CTTTTTCTTCTTTTTCCTTTCTCTCTTTTCTCTTTTCTTTCCCTTCCTCT
CTCCCTTTTTCTCCTTTCCCTTTTTTCTCTTCCTTTCTTTTTTTCCCTCT
TCTTTTTTTCCTTCTTTCTTCTTCTTCTTTNCTTCTCTTCTTCTTTTTTT
TTTTTTTTTCCTCTCTCNCTCCTTTCCTTTTTTCTTTCCTCTCTCCTCCT
CCCCCTTTCTTCTCTTTCTTTTTCTTCTTCCTTCTCTTTTCTCCCCTCTC
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_m18.b1 MSMg01no414_m18.b1 CHROMAT_FILE:
MSMg01no414_m18.b1 PHD_FILE: MSMg01no414_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:57 2005
         (459 letters)



>mm_chr6_79691394_79692252
          Length = 859

 Score =  470 bits (243), Expect = e-137
 Identities = 282/313 (90%), Gaps = 28/313 (8%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcattttaattacccaaatactgtatattatctcttgtctgccgtttgcaattttt 65
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gaattcattttaatcatccaaatactgtatattatctcttgtctgccgtttgcaattttt 254

                                                                       
Query: 66  tctctttcatttttaaactttactttttaaggcttaaatattaatttgtttattttgaaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tctctttcatttttaaactttactttttaaggcttaaatattaatttgtttattttgaaa 194

                                                                       
Query: 126 aattcataagtgtatgaaggtattttaatcatcagcatctgtatccttcagctcccactc 185
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 aattcataaatgtatgaaggtattttaatcatcagcatctgtatccttcagctcccactc 134

                                                                       
Query: 186 cttccagatctctctctctctctctctct----------------------------cac 217
           |||||||||||||||||||||||||||||                            |||
Sbjct: 133 cttccagatctctctctctctctctctctctctctctctctctctctcacacacacacac 74

                                                                       
Query: 218 acacacacacacacacacacacacacacacacaccacatgcatgtcctttctaacttcat 277
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  acacacacacacacacacacacacacacacacaccacatgcatgtcctttctaacttcat 14

                        
Query: 278 gtcttctggtttt 290
           |||||||||||||
Sbjct: 13  gtcttctggtttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)