BAC Information

Click to search

BAC

Clone NameMSMg01-415B06
Chromosome6 (Build37)
Map Location 54,537,980 - 54,708,542
singlet/doubletdoublet
Overlap geneFkbp14, Plekha8, LOC100041292, 2410066E13Rik
Upstream geneCreb5, LOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1
Downstream geneZnrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415B06.T7 (MSMg01no415_b06.b1)MSMg01-415B06.TJ (MSMg01no415_b06.g1)
ACCAG511222AG511223
length746743
length of high quality
(start - end)
440 (40 - 479)465 (69 - 533)
definitionCHROMAT_FILE: MSMg01no415_b06.b1 PHD_FILE: MSMg01no415_b06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:21 2005CHROMAT_FILE: MSMg01no415_b06.g1 PHD_FILE: MSMg01no415_b06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,708,107 - 54,708,542)(54,537,980 - 54,538,444)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TGGTGTACATAAAACCGCTATGGTTAAGGAGGGGAAACTCCTGGTGAAGG
AGGGGAGTTGCTTTGGAGTCTGCTGTTTTTGTTCTTGTGAAGAACCCCAG
GAGGCTGGGGAAATGCTTGGTTTATCTGAGGAACTGTGGGTTATGTGAAT
GGAGGACAGCATTCTCTCCTGACACCCAGGCTCTGGAATTCAGCCCAGCA
CAGCTTGACGATCCCTCTGATTTCTGTTTCCATGGGCACCATGACAGAAG
TGTGCCGCAGAGGATCCCAGTATTCCTCTCAGCCCTTGACAAGAGCAGAC
ACAGAGGAAACAAGTATTGCTACACACTGACTTATTCAGACTTTAAGCTC
ATAGCTGCTATGGCTTTGAATGGATGTATTTCCCCAAAAGTCTTTGATTG
AATAATCACTGAATAGTGCAAAGAGTTGGGGAAATCTTTACAGTAAGTCA
CAAGTATTCACGAAATACTTGTGATTGACTGGATGCTTGAGCTATGCTAA
CTGGTTATTTCCCGGGTTCTGAAAATGGGATTCTAACCGCTGTCGAGGGG
CCCCTAAATTATATTGGGACCCATGCGTTCCTCTCTCCAAAAGAACCTGT
CGCTCCCGGTCCCCTTGATTTTTTTCGCCCTCTTAATGCCTTGTATCCCA
CTCTCTCNCCTTCCTTTTTTTCCTCTTTTCTCGTCTCCTTCCGTAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGCTAAAATACCAGGTGTCAGTGCCTTGGAAA
AAATTGCCACAAAAGCTGTGTGGACCACACAGATAGGCAGTGGTGGTATA
CACCTTTAATCCCAAAACTCATAAGGCAGAGGCAGGCACATCTCTGAGTT
AGAAGGCCAGCCTGGTTTAAAGACCAAATTCCAGGACAGCCAAGGCTACA
CAGAGAAACTCTGTTTTGAAAAACCAAAAATAAATAAAATAAAATTAAGC
TATTGAGAACTTTACTAATAGGTTTAAAAGCAAGAATGCAACTCTCCCAG
TGAGAGCTGTGGTGTGGAAAACTTCCTGGCTGTAACTAGACACAGCCATC
CATCAAACTACATCTGATGAACCTATTCCAAAGGTTCAAATCAAGACACT
TTTCTTGCATTGTTAGAGCGAGATGGCAGGTTTCCTCTAGAGAGGGAAGC
ATTGTGAGCTGCACAGCAGGGAGGGTAACACAGCAGTGAGGGTCACACAG
CAGTGAGGGTCACACAGCAGGTAGGGTCACCTACCAGGAAGGGTCCCCCA
TCAGGTATGGTCCCCCCGCACAGAGGGTCCCCATTCCTGGTAGGTTCTTT
CCGCATGCGAGGTCTTCCCTGCCCCGGGGTGTCTCCTCCCTTCGCATGGT
TTCCCTCCTTGTTCCTGTTTCCATCGTTTTCACGTCTCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_b06.b1 MSMg01no415_b06.b1 CHROMAT_FILE:
MSMg01no415_b06.b1 PHD_FILE: MSMg01no415_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:21 2005
         (440 letters)



>mm_chr6_54707903_54708742
          Length = 840

 Score =  804 bits (416), Expect = 0.0
 Identities = 431/436 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttggtgtacataaaaccgctatggttaaggaggggaaactcctggtgaaggagg 64
           |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 640 gaattcttggtgtagataaaaccgctatggtgaaggaggggaaactcctggtgaaggagg 581

                                                                       
Query: 65  ggagttgctttggagtctgctgtttttgttcttgtgaagaaccccaggaggctggggaaa 124
           |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 580 ggagttgctttggagtctgctgtttttgctcttgtgaagaaacccaggaggctggggaaa 521

                                                                       
Query: 125 tgcttggtttatctgaggaactgtgggttatgtgaatggaggacagcattctctcctgac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tgcttggtttatctgaggaactgtgggttatgtgaatggaggacagcattctctcctgac 461

                                                                       
Query: 185 acccaggctctggaattcagcccagcacagcttgacgatccctctgatttctgtttccat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 acccaggctctggaattcagcccagcacagcttgacgatccctctgatttctgtttccat 401

                                                                       
Query: 245 gggcaccatgacagaagtgtgccgcagaggatcccagtattcctctcagcccttgacaag 304
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 400 gggcaccatgacagaagtgtgccgcagagaatcccagtattcctctcagcccttgacaag 341

                                                                       
Query: 305 agcagacacagaggaaacaagtattgctacacactgacttattcagactttaagctcata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 agcagacacagaggaaacaagtattgctacacactgacttattcagactttaagctcata 281

                                                                       
Query: 365 gctgctatggctttgaatggatgtatttccccaaaagtctttgattgaataatcactgaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gctgctatggctttgaatggatgtatttccccaaaagtctttgattgaataatcactgaa 221

                           
Query: 425 tagtgcaaagagttgg 440
           ||||||||||||||||
Sbjct: 220 tagtgcaaagagttgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no415_b06.g1 MSMg01no415_b06.g1 CHROMAT_FILE:
MSMg01no415_b06.g1 PHD_FILE: MSMg01no415_b06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:21 2005
         (465 letters)



>mm_chr6_54537780_54538644
          Length = 865

 Score =  891 bits (461), Expect = 0.0
 Identities = 464/465 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctaaaataccaggtgtcagtgccttggaaaaaattgccacaaaagctgtgtggaccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctaaaataccaggtgtcagtgccttggaaaaaattgccacaaaagctgtgtggaccac 260

                                                                       
Query: 61  acagataggcagtggtggtatacacctttaatcccaaaactcataaggcagaggcaggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagataggcagtggtggtatacacctttaatcccaaaactcataaggcagaggcaggca 320

                                                                       
Query: 121 catctctgagttagaaggccagcctggtttaaagaccaaattccaggacagccaaggcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catctctgagttagaaggccagcctggtttaaagaccaaattccaggacagccaaggcta 380

                                                                       
Query: 181 cacagagaaactctgttttgaaaaaccaaaaataaataaaataaaattaagctattgaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacagagaaactctgttttgaaaaaccaaaaataaataaaataaaattaagctattgaga 440

                                                                       
Query: 241 actttactaataggtttaaaagcaagaatgcaactctcccagtgagagctgtggtgtgga 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actttacaaataggtttaaaagcaagaatgcaactctcccagtgagagctgtggtgtgga 500

                                                                       
Query: 301 aaacttcctggctgtaactagacacagccatccatcaaactacatctgatgaacctattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaacttcctggctgtaactagacacagccatccatcaaactacatctgatgaacctattc 560

                                                                       
Query: 361 caaaggttcaaatcaagacacttttcttgcattgttagagcgagatggcaggtttcctct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaaggttcaaatcaagacacttttcttgcattgttagagcgagatggcaggtttcctct 620

                                                        
Query: 421 agagagggaagcattgtgagctgcacagcagggagggtaacacag 465
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagagggaagcattgtgagctgcacagcagggagggtaacacag 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)