BAC Information

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BAC

Clone NameMSMg01-415N08
Chromosome6 (Build37)
Map Location 54,755,839 - 54,756,148
singlet/doubletsinglet
Overlap genenone
Upstream gene1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik
Downstream geneZnrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415N08.T7 (MSMg01no415_n08.b1)MSMg01-415N08.TJ (MSMg01no415_n08.g1)
ACCAG511797AG511798
length753762
length of high quality
(start - end)
377 (68 - 444)310 (73 - 382)
definitionCHROMAT_FILE: MSMg01no415_n08.b1 PHD_FILE: MSMg01no415_n08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:19 2005CHROMAT_FILE: MSMg01no415_n08.g1 PHD_FILE: MSMg01no415_n08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGAGCCGCGGA
ATTCAGCACTGCGACACACTATTGGCTTATTCAAACATTAACAGAAAGAT
TACAGGGCATCAAGACTTTGTTCCTGTGGGCTGGGGGCTTATCTTTGTTC
ACATAGCAACCAGTTGATGTATGACTTTACCCATCGTCAAGGGGCAGTAG
ACAGAGGGGAGGTTCCAGCCAGGTGGTGTTGACTCAGATAATATAGCCCT
GCTATGTCTTCACAGTCCCCTTTATCTTATGGTCAAGATGTTCCCAGGAA
TGTTTTAACTACGATGTTTACCCAGGTTTGTTTTTCTCTTTTCTCAGCCC
CAGGCAGCCTCTAGGCTCACAACCAGCAATTTCTGAGTACTTTATATGAC
TTACAGGTCTTGACATTTCATCTTTCTTTCACCCTGATAAAATTCTTATG
CATGACTCCCTCCTGTCGGAGGTAGAAAATGGCAGATAGGAGACGGATAA
CTCCCTTCGGAAGTCTGTTTTGCTCACTACGTTCTTTACCTCTTTATGTC
TTGTCCACGACCGGTTTGTCTCCGTTGTGTTGGTCCCCCATTCCTGACTT
CCCCTCTCTTGTTTTCTTACACTTCCGTCGTTCACACCTTTATCCTGTTT
TCCCTCCCCTTCCCCTTTTATTTTATCCCCCGCTATTTTTCCTTTCTTTC
CTCTCTCTCGTCCCTTGCTTTTCTCTTCCTCTTTCCTCTTTTCCCCTCTC
TTT
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTAGCGAGTGGGGACTCCAGGACTTTTC
TAGCTCCACCAACACATGCTGAATGTTTGGCTGCTTCTGAGTAGGAATTC
TCAGCTAAGCTAGGCTTGGGCGTAGGTAATGCCACCTGAGGGAAGGAGAG
GGCCCGGTAGAACTGCGTAGGGTTTTGGTCTGATACGTGTATCTCCCAGC
CTTTCTGCCAAGCAGTTCTCCTTTTGGAAGCCACAGTTGCAGCTGACAAG
TTGCTGGTGTTTTGTTGTCTAGCACTGCAGCGTGATACAGCAAAAGAAGC
CAAAGGCAGGGAGTATTGGCATTTTGTGTAATGGCTTCATACTGTCTGGA
TTTCATAATTCAGGACATATTACAAAACAGTTCAGAAATCAATATCAGAT
TGTTAATTTTTCCTTGTCCCATGCAAGGAAATACTTGACCTTTGAGGACG
ATTCCATATGGCGCTGTCCCTTTCCTTTCCCTCTTCCTTCTCCTTTCCTT
TCTCCCCTTTTTTATTCCCCTTTATCCCCCCTTTACCTTCTTCCTCCCTC
TCTTCTCCCCCGTCTCGACCTTCTCCTTCCTTTCCCCTTTCTTCTCTCTT
TCTCTCTTTCTTCCTTCTTTCTCTCTCCTCCTCTCTCCCCTTTTCCTCTT
TTCTTCCTCTTCCCTTCCTTTTTTTCTTTTTTTTCCTTCCCTTTTTCTCT
CTCTTCCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_n08.g1 MSMg01no415_n08.g1 CHROMAT_FILE:
MSMg01no415_n08.g1 PHD_FILE: MSMg01no415_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:19 2005
         (310 letters)



>mm_chr6_54755639_54756348
          Length = 710

 Score =  545 bits (282), Expect = e-159
 Identities = 303/310 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagcgagtggggactccaggacttttctagctccaccaacacatgctgaatgtttggct 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagcgagtgaggactccaggacttttctagctccaccaacacatgctgaatgtttggct 260

                                                                       
Query: 61  gcttctgagtaggaattctcagctaagctaggcttgggcgtaggtaatgccacctgaggg 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 gcttctgagtaggaattctcagctaagctaggcttgggcataggtaatgccacctgaggg 320

                                                                       
Query: 121 aaggagagggcccggtagaactgcgtagggttttggtctgatacgtgtatctcccagcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggagagggcccggtagaactgcgtagggttttggtctgatacgtgtatctcccagcct 380

                                                                       
Query: 181 ttctgccaagcagttctccttttggaagccacagttgcagctgacaagttgctggtgttt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 381 ttctgccaagcagttctccttttggaagccacagttgcagctgacaagttgctggtgggg 440

                                                                       
Query: 241 tgttgtctagcactgcagcgtgatacagcaaaagaagccaaaggcagggagtattggcat 300
           ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtagtctagcactgcagtgtgatacagcaaaagaagccaaaggcagggagtattggcat 500

                     
Query: 301 tttgtgtaat 310
           ||||||||||
Sbjct: 501 tttgtgtaat 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)