BAC Information

Click to search

BAC

Clone NameMSMg01-416B09
Chromosome6 (Build37)
Map Location 11,970,011 - 11,970,258
singlet/doubletsinglet
Overlap genenone
Upstream geneNdufa4, Phf14, LOC100040844
Downstream geneEG625347, LOC435879, Thsd7a, LOC667735
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416B09.T7 (MSMg01no416_b09.b1)MSMg01-416B09.TJ (MSMg01no416_b09.g1)
ACCAG511988AG511989
length708627
length of high quality
(start - end)		591 (36 - 626)248 (57 - 304)
definitionCHROMAT_FILE: MSMg01no416_b09.b1 PHD_FILE: MSMg01no416_b09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:38 2005CHROMAT_FILE: MSMg01no416_b09.g1 PHD_FILE: MSMg01no416_b09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TTATCTCTGAAACCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGTCC
ACCTTCTTGAGTTCTTTATATATATATTGGATATTAGTCCCCTATCTTAT
TTAGGATAGGTAAAGATCCTTTCCCAATCTGTTTGTGGCCTTTTTGTCTT
ATTGATGGTGGCTTTTGCCTTGCAGAAGCTCTGCAATTTTATGAGGTCCC
ATTTGTCAATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGG
AATTTTTCCCCTGTACCCATACCTTCGAGGCTTTTCCCTACTTTCTCCTC
TATAAGTTTCAGTGTCTCTGGTTTTATGCGGAGTTCCTTGATCCACTTAG
ATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCACATTCTTCTA
TATAACTGCCATTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTT
CCACTGGATGGTTTTAGCTCCCTTTTCAAAGATCAAGTGATCATAGGTGT
GTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTG
TTGCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTANTCCAG
CTTTATGTCAGGCATGGGCATTCCACCAGAGGTTCTTTTATCCTTGAGAA
GAGTTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTGTCCTTATTGCTTTTGAAAATGAACTGTGAGTGAAATAAAAC
CTTTCCTGTTTAAGTTGCTTGTGTTCATGGTGTTTCATCCCAGGATTCAC
TTGTGTTCTCAGTTTCCTAATGTGTTTTCTTTCCCCACTTACCAAAGAGC
CAGAAATCAGATGAATATACATATATGTGCCTTCCTCAATCACTCTATTT
TCTTTTCTCTTCTCTTCTTTCCTTCCTTCTTTTCTTTTTCGTTTTTTTCT
TTACACAGGGTCTGCCTTGTGGAAGCTCATTGAATTGGGTAAAATTGGGT
GGCCCAAAATTTTCCCAGAAAACCCCCCGTTTTTCCGCCCATTATTTAGG
GGGAAAAAAATTTTGCCCGTTTTTTTAAGGGGGCCAAAAAAAAATTTGGT
TTAAAAAAGGGGGGGCAACGCTCTTTCTCTTTTTGTAAAAAAAAACCCCC
CCCCCCCCAAAAAAATTTTTTTTTTGTTGGGAAAAAAAAATTTTTTTTTT
TTTGGGGGGGGCCCCCTCCCCCCCCCCNNNNTCCTGATANNATATTNAAA
AAAAAAAGAAATATCTTCTCCTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_b09.g1 MSMg01no416_b09.g1 CHROMAT_FILE:
MSMg01no416_b09.g1 PHD_FILE: MSMg01no416_b09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:38 2005
         (248 letters)



>mm_chr6_11969781_11970428
          Length = 648

 Score =  464 bits (240), Expect = e-135
 Identities = 246/248 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtccttattgcttttgaaaatgaactgtgagtgaaataaaacctttcctgtttaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 478 ttgtccttattgcttttgaaaatgaactgtgagtgaaataaaatctttcctgtttaagtt 419

                                                                       
Query: 61  gcttgtgttcatggtgtttcatcccaggattcacttgtgttctcagtttcctaatgtgtt 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gcttttgttcatggtgtttcatcccaggattcacttgtgttctcagtttcctaatgtgtt 359

                                                                       
Query: 121 ttctttccccacttaccaaagagccagaaatcagatgaatatacatatatgtgccttcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttctttccccacttaccaaagagccagaaatcagatgaatatacatatatgtgccttcct 299

                                                                       
Query: 181 caatcactctattttcttttctcttctcttctttccttccttcttttctttttcgttttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 caatcactctattttcttttctcttctcttctttccttccttcttttctttttcgttttt 239

                   
Query: 241 ttctttac 248
           ||||||||
Sbjct: 238 ttctttac 231


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |