BAC Information

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BAC

Clone NameMSMg01-416D05
Chromosome6 (Build37)
Map Location 54,487,072 - 54,487,324
singlet/doubletsinglet
Overlap geneScrn1
Upstream geneCreb5, LOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3
Downstream geneFkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416D05.T7 (MSMg01no416_d05.b1)MSMg01-416D05.TJ (MSMg01no416_d05.g1)
ACCAG512075AG512076
length702619
length of high quality
(start - end)
251 (49 - 299)73 (52 - 124)
definitionCHROMAT_FILE: MSMg01no416_d05.b1 PHD_FILE: MSMg01no416_d05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:46 2005CHROMAT_FILE: MSMg01no416_d05.g1 PHD_FILE: MSMg01no416_d05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCACATATTTCGAAGATCCGCGGAATTCAAAGGGACGGTACGTAAAAGA
CAAGAAATGGCCTCTGTCAGGAAGTAAGATGGGCAAAGCAGCTCGAGGCC
AAATAGAAAGACAGAGAAACTTAAATGGACACAAGAAGCAGGGAAACCCC
TCACCCTGGGATCTAGCTTGCCTTCTGAGAGCCTAGAGAATTCAGCACAG
CTGCTAAGGCCAAAATGACCTGAGCGCTTTCCTAGAAGCATCTCCAGCAA
GAATGTTCAAGACAGCAAATGAGGAGGGCAGAGAGGTGGCTCTGTGGTTA
AGTGTTCCGGCTTCTCTCTCANAGGACCTGGGTTCAATTCCCAGCAATCA
CATCACGGCTCACCACCGGCCCACACCTGTTTATAACTCTACTTCCAGAG
CATCTAATGTCTCCTTCTGCTCTCCAGGGCCGCCAGGCAAGCACGTGGGA
CACCGACTTATATACTGGCAAAAACCCCTACCCCCCTTACATAATAATGA
ATTATCTAACGAACGGTGGGTTTCTTGAAACCCCAAAAACGGTTTGTATT
CCCCGTGTTTCCCTTCGAAATTATACCCCCCCTCCCCCCTTTTTTTCCCC
CTTAGCCCCTAAACCCCATCTTCCTTTTTGAAAAAAAAGGCAAATTAACC
TTTTAAACAAAATAATAAATTCTTTTGGATTTTCAATAAAAATCCACCCT
TC
TGGCGCCGCCTGCCTTCCAATTTANGTGAACTATANAANGTCTGCCGAAT
TATGGTGATTTGCCATACACCACATAAGATATAANGTGCGGCTCATCTGA
CGTCCTTTGCTTTCTTAATCTCTGGANAAACAAANNNNTGATATGATAAN
TTAATAAAAAGCGAATAATATGTGGGTTGTAACACCTCTAGNNNNNNNNN
NNAAANNNNNNNTTTTTTTTTTTTTTTTTTTCTTATGGAGGGGGGGGGGG
GGGNNNNNNNNCTNNNNNNAANNNNNNNNAATTTTTTTTTGNNNNNNNNN
NNNNNNNNCCTAAAAANNNTTNTTTTTTTTTTTTTTTTTTTTTTTCTGGG
GTGGGAAAATTAACTNANNNCNNNNNNGNNNNNNNNNNNGNAAGACNNNN
NNGNNNNNNNCCNNNNNNNNCCNNNNNNNNNNNNCNCCNNNNNNANCCCC
CCNCCCCCCCCCCCCCCACAACNCAAAAAACGACACNNCCCCCCCCCCCC
CCCCCCCCCACCCCNNCACACCCCCAACCCCCCNAACCCNCCCCCCANCA
ATTTTCCCNCCCAACCCACAACCAACCCACTCTTTTTCACTTTTTTTTTT
TTTTTTTTTTTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_d05.b1 MSMg01no416_d05.b1 CHROMAT_FILE:
MSMg01no416_d05.b1 PHD_FILE: MSMg01no416_d05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:46 2005
         (251 letters)



>mm_chr6_54486872_54487524
          Length = 653

 Score =  451 bits (233), Expect = e-131
 Identities = 248/253 (98%), Gaps = 2/253 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacaagaaatggcctctgtcaggaagtaagatgggcaaagcagctcgaggccaaatagaa 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 gacaagaaatggcctctgtcaggaagtaagataggcaaagcagctcgaggccaaatagaa 260

                                                                       
Query: 61  agac-agagaaacttaaatggacacaagaagcaggg-aaacccctcaccctgggatctag 118
           |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 agacgagagaaacttaaatggacacaagaagcaggggaaacccctcaccctgggatctag 320

                                                                       
Query: 119 cttgccttctgagagcctagagaattcagcacagctgctaaggccaaaatgacctgagcg 178
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgccttctgagagcttagagaattcagcacagctgctaaggccaaaatgacctgagcg 380

                                                                       
Query: 179 ctttcctagaagcatctccagcaagaatgttcaagacagcaaatgaggagggcagagagg 238
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 ctttcctagaagcatctccagcaagaatattcaagacagcaaatgaggagggcagagagg 440

                        
Query: 239 tggctctgtggtt 251
           |||||||||||||
Sbjct: 441 tggctctgtggtt 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 653
Length adjustment: 9
Effective length of query: 242
Effective length of database: 644
Effective search space:   155848
Effective search space used:   155848
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)