BAC Information

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BAC

Clone NameMSMg01-416F03
Chromosome6 (Build37)
Map Location 130,358,713 - 130,359,281
singlet/doubletsinglet
Overlap geneLOC625436
Upstream geneClec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903
Downstream geneEG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947, LOC625628, EG625648, LOC667830, EG434094, Klra2, LOC434095, 2010012C16Rik, Styk1, Csda
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416F03.T7 (MSMg01no416_f03.b1)MSMg01-416F03.TJ (MSMg01no416_f03.g1)
ACCAG512166AG512167
length727723
length of high quality
(start - end)		576 (36 - 611)569 (50 - 618)
definitionCHROMAT_FILE: MSMg01no416_f03.b1 PHD_FILE: MSMg01no416_f03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:55 2005CHROMAT_FILE: MSMg01no416_f03.g1 PHD_FILE: MSMg01no416_f03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTCC
TTTTTCTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTGT
TTCTTTATTTCTTTATTTCTTTATTTCTTTATTTCTTTATTTCTTTATTT
CTTTATTTCTTTATTTCTTTATTTCTGTCTCTCTTTCTTCCAATCCTTTC
ACCTTTCTTTCTCTCTCTCTTTCTCTCTTTCTCTATCTCTTAATTTCTTA
CTTTTTTCTTTTTTACTTTCTTTCTCTCACTCTTTCTTTCCTGTGTTCTA
TTTTTTTATTAAATATGGTCTAATAAGAGTCAAATTGATAAAAGGAGACT
TCAGTTGAGAAAATGCCTGTATCTGATTGTCTAGTATGCAAAAGATCATT
AAGTACTTTTTGACTGATTATTTACTATTGCAAGTGCCATCCCTGGACAG
CTGGAATAAGAAATCAGTCTGCACAAGATAGTGATTCTATTCCTTCATTA
TCTCTTCATTAGTGCCTGCCTCTGAGGTCATGTTTGATTTCCTCTCCTGA
CTACCATTCATAATGTACTGTAAGATATAAGATGAAATATACACTTTACT
CTCCCCTAAAATAAAGAAGAAAGAAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA
CATTGTAATGTTGTCTTCTGGAGACATGCACCTTGGCTTGCCAGTGTCAC
CCCAAGAGCAGTAATAAATAATAACAATTTTGAAAAAGAATTTTGTATTG
GAAAGATTCTTTTTGACCAAGAAATAAGGCTAAAAGTAAGTAAACACAGA
AAACTTCATGAAGAGAGAGAGAAAAAAAAAACTATAGAAGAATGATGTAA
CATGTCCCATGTCCAGCTTTTTCCCCTTATTTTCTACTGGCTCTCCTCTC
AGGTATTAACGTAAGTGTAAGGTCAGTTACAAATACATACTATTTACTGA
TACAGTCATACCTATTATCAGATTGTATCTTTCATGGGCATTAGCTCATT
TAGGCTGCATGGTGACATTTATTTTCATATATCCTCCTGTAGCAATATCA
TGTATGAATATATTATATGTAACAGGATTATGTACATGGGATGATTTGAG
ATTAAAACTTCATATTGTATCCTCTATGCTTCGCTATGATATTCCCACAC
CCTACCCAGTAATATCCCCATTCTACTTTCATGGTTGCTGAAGTTACAGA
AGTGAAGATTTTGATCCAAGAACCTCAGATGAGAGAGAATATTCAGGATT
CCCTTCTAGGTCTGGATTAGTCAGTGGGAACTCTCCCAGTTGAATCCATT
TACAAAGGACAACCCTGGATCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_f03.g1 MSMg01no416_f03.g1 CHROMAT_FILE:
MSMg01no416_f03.g1 PHD_FILE: MSMg01no416_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:55 2005
         (569 letters)



>mm_chr6_130358513_130359481
          Length = 969

 Score = 1031 bits (533), Expect = 0.0
 Identities = 560/569 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acattgtaatgttgtcttctggagacatgcaccttggcttgccagtgtcaccccaagagc 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 769 acattgtaatgttgtcttctggagacatgcaccttagcttgccagtgtcaccccaagagc 710

                                                                       
Query: 61  agtaataaataataacaattttgaaaaagaattttgtattggaaagattctttttgacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 agtaataaataataacaattttgaaaaagaattttgtattggaaagattctttttgacca 650

                                                                       
Query: 121 agaaataaggctaaaagtaagtaaacacagaaaacttcatgaagagagagagaaaaaaaa 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 649 agaaataagactaaaagtaagtaaacacagaaaacttcatgaagagagagagagaaaaaa 590

                                                                       
Query: 181 aactatagaagaatgatgtaacatgtcccatgtccagctttttccccttattttctactg 240
           || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 589 aattatagaagaatgatgtaacatgtcccatgtccagctttttcctcttattttctactg 530

                                                                       
Query: 241 gctctcctctcaggtattaacgtaagtgtaaggtcagttacaaatacatactatttactg 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gctctcctctcaggtattaatgtaagtgtaaggtcagttacaaatacatactatttactg 470

                                                                       
Query: 301 atacagtcatacctattatcagattgtatctttcatgggcattagctcatttaggctgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 469 atacagtcatacctattatcagattgtatctttcatgggcattagctcatttatgctgca 410

                                                                       
Query: 361 tggtgacatttattttcatatatcctcctgtagcaatatcatgtatgaatatattatatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tggtgacatttattttcatatatcctcctgtagcaatatcatgtatgaatatattatatg 350

                                                                       
Query: 421 taacaggattatgtacatgggatgatttgagattaaaacttcatattgtatcctctatgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 taacaggattatgtacatgggatgatttgagattaaaacttcatattgtatcctctatgc 290

                                                                       
Query: 481 ttcgctatgatattcccacaccctacccagtaatatccccattctactttcatggttgct 540
           |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 289 ttcgctatgatatttccacaccctacccagtaatatccccattttactttcatggttgct 230

                                        
Query: 541 gaagttacagaagtgaagattttgatcca 569
           |||||||||||||||||||||||||||||
Sbjct: 229 gaagttacagaagtgaagattttgatcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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