BAC Information

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BAC

Clone NameMSMg01-416G13
Chromosome6 (Build37)
Map Location 88,691,655 - 88,691,899
singlet/doubletsinglet
Overlap geneMgll
Upstream geneLOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik
Downstream geneAbtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1, Chchd6, Txnrd3, V1r-ps1, V1rb7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416G13.T7 (MSMg01no416_g13.b1)MSMg01-416G13.TJ (MSMg01no416_g13.g1)
ACCAG512233AG512234
length797701
length of high quality
(start - end)
86 (48 - 133)245 (53 - 297)
definitionCHROMAT_FILE: MSMg01no416_g13.b1 PHD_FILE: MSMg01no416_g13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:01 2005CHROMAT_FILE: MSMg01no416_g13.g1 PHD_FILE: MSMg01no416_g13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCTTTGCGGAACCGATCCGCGGAATTCTCTACTTTGCATAGCCCTGG
CAGAGGATTTTGGACAGAAGCCCCCTTCCTTTGATTTAAGTTCACTCAGT
GTGACAGGTGAGGGGTGGGGGCTGGGGGGAAGGGAGGGCTGGACGGCGGA
CCCCCCTCCTCCTCTTCCTCTCCCTCCCCTTCCTCTTTTCTCCTCTCCTC
CCTCCTTCTCCCCCCCCTCCGTCTTTTTTTCCTCTCTCCGCTTCTCTCTT
CTTCTCCTTTCCTCCCCCCCTCTCTCTCCCCCTCGACCGATTTTCCTCTT
TTTCCCCCCCAATCCTTTCTTTCTTTTTCCTCTCTTTCTTTTCTTCCCTC
CCTCTCGTTGCTTCCTTTTTCTCTCTCCTCCTCCTCTCTCCCTTCCCTCC
CCCCCTCCTTTCTCCTCTTTTTTCCTTCCCTTCTTCCTTCTCTTTTTCCT
TCCTCTTCTTCTTCCTCCTCCCCTCCCTCCCTTCCTTCTTTCTTTCCTCC
TCTTTCCTCTCTCTCCTTCTCTTCTTCCTCCTCCCTCTCCTTTCTCCTTC
CTCTTTTCTCCTCCCCTTCTCGTTCTCCCCTCTCCTTTTCCTCCTTCCTC
CCTCCCTCTCTCTTCCTCTTCTCCTCCTCCCCTCTTCTCCTCCTTCCTCT
CTCTCTCCCCTCCCTTTTCCTCTCCTCTTTTCCCTTCTCTCCTTTCTCTC
CTTCCTCTCTCTTCCTTTTCCTCCCTGCTTTCTCTTCCCTTCTCTCCTGC
TTCCTTTTTTCCTTTTCTTCTTCTCCCCTCCCCTCTCTCTCCTCCTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTCTGGGAGAGCAGCCAGTGCTCTTAACTGCTGAGCCACCTCTCTCGTT
ATGGCCCTCCAGTTCCATTTTATAGATCAGAAGGCTGGGGCTTGGAAGGG
CGTGATGGTTGAGGTCCCACTCTGAGGAATGGCGGGTTTAGACAGCTTGA
TGTCCATGCTCTGTCCACCCTGCATGGGTGTCCAAATCCAGCATCTGCTT
CCCTGATGCCAGCCTAATGCAGCTGCCCATTTAGGTCACAGCTGAGCTCT
TATGCTCCATCACATGTCTAGATGGGGACATTTTCCCCACCTCTCCTGCA
TGCTCCATAAATTCCTAATTGCTTGCTGCCATCCGCTTGGCATTTCACCA
CCCAGAACTTGGAGCCATCTGCAGCCTTGGGGAGTTCATGCTGTTTTCCT
TCCAGGAAAAAAAATTACATAAGATGAAGCCCAGAACCTTCTTATAGGGA
GCCTCCTGCTGAAGAAAGAGCTCAGGCTTAGTAGCCCTACCTGCTGTTTC
CTGGTATCCTGGTTCCGAGTTGTGCTGCTTCTGTGCTCTGAGCCAGTCTC
CCTTGCGATACCTTCCGGAAACAGCCACATGCTCTTGCTGGTTTGGACAG
GCCCGTCCCCTCCAGCGGTCCCTTGGACTCTGCGTTGGGTTGATTCGCCC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_g13.g1 MSMg01no416_g13.g1 CHROMAT_FILE:
MSMg01no416_g13.g1 PHD_FILE: MSMg01no416_g13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:01 2005
         (245 letters)



>mm_chr6_88691455_88692099
          Length = 645

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgggagagcagccagtgctcttaactgctgagccacctctctcgttatggccctccag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tctgggagagcagccagtgctcttaactgctgagccacctctctcgttatggtcctccag 260

                                                                       
Query: 61  ttccattttatagatcagaaggctggggcttggaagggcgtgatggttgaggtcccactc 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 ttccattttatagatcagaaggctggggcttggaagggcgtggtggttgaggtcccactc 320

                                                                       
Query: 121 tgaggaatggcgggtttagacagcttgatgtccatgctctgtccaccctgcatgggtgtc 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaggaatggcaggtttagacagcttgatgtccatgctctgtccaccctgcatgggtgtc 380

                                                                       
Query: 181 caaatccagcatctgcttccctgatgccagcctaatgcagctgcccatttaggtcacagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaatccagcatctgcttccctgatgccagcctaatgcagctgcccatttaggtcacagc 440

                
Query: 241 tgagc 245
           |||||
Sbjct: 441 tgagc 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)