BAC Information

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BAC

Clone NameMSMg01-416J02
Chromosome6 (Build37)
Map Location 125,548,295 - 125,548,794
singlet/doubletsinglet
Overlap geneVwf
Upstream geneEG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9
Downstream geneTmem16b, Ntf3, LOC100043565, LOC667427, LOC100043567, Kcna5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416J02.T7 (MSMg01no416_j02.b1)MSMg01-416J02.TJ (MSMg01no416_j02.g1)
ACCAG512354AG512355
length733720
length of high quality
(start - end)		496 (67 - 562)504 (56 - 559)
definitionCHROMAT_FILE: MSMg01no416_j02.b1 PHD_FILE: MSMg01no416_j02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:13 2005CHROMAT_FILE: MSMg01no416_j02.g1 PHD_FILE: MSMg01no416_j02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACCAAAGCCTTGCTTCCAATCACACAAGTACACTTTGCATCATGTGTCAA
TGCTCCACACAGCACCAACAGGTACTAAACAAATCACCTCATTGGGACTG
GAGACTTGTGGTTGGTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCT
TTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCT
TTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCT
TTGCTTTGCTTTGCTTTGCTTTGCTTTGATTGGGGGAAACAATGGGTTGG
TTTTTTCTATATATACACAATTTTCTGTTCTTATATAAACAAAATGGCTC
CATGATGGAAAACAAAGAATTTTAATATTGTACTCAGCCTATAAGGAATC
AAATTAGTGTATCTTTGGAATGTGTTGTGTTAGTATGTGCAATTTTTAAA
ATGGCTGTGTTGCCGACTTGACTTTCATTTTCAATCCACTAAATGAATTT
TAATTTGGGATCAGGACAGAATTTCCAGTAATTTCTAAAATGATATTAAA
TATACTTCCGCTATTTTGCACCACGAATTTATATGAAGTAATGTTCCCAG
CATTGATGATTATCAATTCTGAAAAATGTTGAACATGTTCTATGCCCCAA
ACCAACAATTATTCCACCTAAAATCAATTCTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAGGTCTCTAGTCATCTCCCTTAGCTGCCCTGTTTATAAAACAGGA
TGTTGACCTGTAACCAGCTTGAGAGTGGGAACTACCTGACCTTGAATCCT
TTGACCATACTTAGCCTTGATTGTCATGGGGAAAAGGGTACCTGGGGCCT
TTGGGTACCTCACCTTGCCAAGGTATAGCTTCTCCCCTCACCTCTTCTGG
GTTCTTCCAGGGGAGTGTCTTGTCACAGGCCAATCGCACTTCAAGAGCTT
CGACAACAGGTACTTCACCTTCAGTGGGATCTGCCAATATCTGCTGGCCC
GGGACTGCGAGGATCACACTTTCTCCATTGTCATAGAGACCATGCAGGTG
AGCTCGGCCAGGCTGCCTGTCAGAAGGCTGCAGAGCCTCATGGTGAGAAG
GCAGTGAGTGTCCTGGGGGCTGGAGCACCTGTCTGTGCACAGAGGGGAGC
CCGTCCTCTGGCCTTCAGTGACTTCATGCAAACCGAGACTGTCTGTCCCT
GCTTANCTGCTGAGAGATGCGTAGGGTTTGTTATTCANGAAGGCCACCCC
CTCAGGTCTAGTCTGTGGTTCCCTAAACCTCTGCTTTTTTGAATGGAGGG
CTAAGTGGGGTGGGGGAAAAGATGGTCCCCTTCCTTTAGTGTGCCCGGGA
ACTGAGAATGGTTTCTCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_j02.g1 MSMg01no416_j02.g1 CHROMAT_FILE:
MSMg01no416_j02.g1 PHD_FILE: MSMg01no416_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:13 2005
         (504 letters)



>mm_chr6_125548095_125548998
          Length = 904

 Score =  936 bits (484), Expect = 0.0
 Identities = 496/500 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtctctagtcatctcccttagctgccctgtttataaaacaggatgttgacctgtaacc 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 aggtctctagtcatctcccttagctgccctgtttataaaacgggatgttgacctgtaacc 260

                                                                       
Query: 61  agcttgagagtgggaactacctgaccttgaatcctttgaccatacttagccttgattgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcttgagagtgggaactacctgaccttgaatcctttgaccatacttagccttgattgtc 320

                                                                       
Query: 121 atggggaaaagggtacctggggcctttgggtacctcaccttgccaaggtatagcttctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggggaaaagggtacctggggcctttgggtacctcaccttgccaaggtatagcttctcc 380

                                                                       
Query: 181 cctcacctcttctgggttcttccaggggagtgtcttgtcacaggccaatcgcacttcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctcacctcttctgggttcttccaggggagtgtcttgtcacaggccaatcgcacttcaag 440

                                                                       
Query: 241 agcttcgacaacaggtacttcaccttcagtgggatctgccaatatctgctggcccgggac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcttcgacaacaggtacttcaccttcagtgggatctgccaatatctgctggcccgggac 500

                                                                       
Query: 301 tgcgaggatcacactttctccattgtcatagagaccatgcaggtgagctcggccaggctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcgaggatcacactttctccattgtcatagagaccatgcaggtgagctcggccaggctg 560

                                                                       
Query: 361 cctgtcagaaggctgcagagcctcatggtgagaaggcagtgagtgtcctgggggctggag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctgtcagaaggctgcagagcctcatggtgagaaggcagtgagtgtcctgggggctggag 620

                                                                       
Query: 421 cacctgtctgtgcacagaggggagcccgtcctctggccttcagtgacttcatgcaaaccg 480
           |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 621 cacctgtctgtgcacagaagggagcctgtcctctggccttcagtgacttcatgcaaaccc 680

                               
Query: 481 agactgtctgtccctgctta 500
           ||||||||||||||||||||
Sbjct: 681 agactgtctgtccctgctta 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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