BAC Information

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BAC

Clone NameMSMg01-416O04
Chromosome6 (Build37)
Map Location 135,499,333 - 135,538,999
singlet/doubletdoublet
Overlap genenone
Upstream geneLrp6, Mansc1, Loh12cr1, LOC100043884, Dusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a, Gprc5d, LOC100043668, Hebp1, 8430419L09Rik, Gsg1, Pbp2, LOC100043890, Emp1
Downstream geneGrin2b, EG668137, LOC545887, E330021D16Rik, EG627022, LOC100043893, Atf7ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416O04.T7 (MSMg01no416_o04.b1)MSMg01-416O04.TJ (MSMg01no416_o04.g1)
ACCAG512596AG512597
length723733
length of high quality
(start - end)		552 (14 - 565)472 (77 - 548)
definitionCHROMAT_FILE: MSMg01no416_o04.b1 PHD_FILE: MSMg01no416_o04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:36 2005CHROMAT_FILE: MSMg01no416_o04.g1 PHD_FILE: MSMg01no416_o04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,499,333 - 135,499,873)(135,538,669 - 135,538,999)
sequence
CTCACTATTGCGAGAGGATCCGCGGAATTCTCCAATTGCCAGCATTTTCC
CACCATCTCAAGACTACATACATGTAATGTTTCCCAACTATCCTTCTTAC
AACTGACATTAGAAGCATGCTGCTTTCATCTAGTGAAGGTTGCTTGCTAC
TGGTGACAATCAAGATTGCAGGTAAGGAATTGGCCTCTGATGTTGTCCTA
GACCACACCCAACAAACCACAAGAGAGAGGCAACCAGACCCAGTTAGCTT
TGATTTTTCAACTTGACAGCCTAGAGTCATCTCAGAGGAAAGCCTAGACT
GAGGATTTGCTTCTATCAGATTGACCTATGAGCATATCTTGGAGGAGGGT
CTGGCTGGTGGTCCTGGGCTGTCTAAGAAAGCTAGCTAAATGCGAGTGAG
CTAGAGAACAGGCCAAGAAGGAGTGTTTCTCCGTGGTTCCTGCCTTAGTT
TCCTGTCTTGAATGTCTTGTCTTCTAAGATGGACTATGACCTGGAAGTAT
AAGCCATTCGGTTTCCCCCTCCCATAGCTTACTTTTGGTCCATGTGTTTA
GCACAGCAACACAAAGAAAACTAGAACCCCCCACTCCCCCAGCATTCCTC
CGGGGCCACTGAAACAAGAGAAGCCCCTGTGTTAGCAACACCTGCTCTCC
CATTGAACTTCTTGGATTCCTAAAATTAAAATTGGTTTTTTTTTTTGCTT
GGTTGGTCCCAAAAGCCTTGACN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGCTCAGATTGATCTATTCTG
CAATCTTAGTTAGGGTTTTACAGCTGTGAACAGACACCATGACCAAGGCA
AGTCTTATAAAGGACAACATTTAATTGGGGCTGGCTTACAGGTTCAGAGG
TGTGGTCCATAATCATTAAGGCAGGAAGCATGGCAGCATCCAGGTGCAGG
AGAAGCTGGGAGTTCTATATCTTCATCTGAAGGCTGCTAGAAGAATACTG
ACGTCCAGGCAACTAGGATAAGTCTTATAACCCACACCCACAGTGACACA
CCTACTCCAAAAGGCCATACATTCTAATCATGCCACTCCCTGGGTTGAGC
ATATACAAACCATCACATCTGCCCTGTCCATTGAGAAACAGAGTGTAGTA
TCTGGGGGTTGTGTTTGTGAATAGAGACTAGATTTTCACTTTATTCTTTA
ACTGAACTTTCCTTTAGTGACTATCCCTCACATCCCCTGGGCCTCTGGAA
AAGCTATTCTCCCCTAGCCGCAGACCTACTTTGATTTTGGCGTCAGACAA
GTCATGAAATTTTGAGTGGGATGTGGTGCTTGAGTACGACGCATACGAAC
GTGTATCTGGANCGCTGGCCTGTAATTCTCCTCGCTAGCACCTGGGTCGT
GCGTACCGTAAAAACGATACGTTCTGAACTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_o04.b1 MSMg01no416_o04.b1 CHROMAT_FILE:
MSMg01no416_o04.b1 PHD_FILE: MSMg01no416_o04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:36 2005
         (552 letters)



>mm_chr6_135499122_135500073
          Length = 952

 Score = 1046 bits (541), Expect = 0.0
 Identities = 541/541 (100%)
 Strand = Plus / Plus

                                                                       
Query: 12  gaattctccaattgccagcattttcccaccatctcaagactacatacatgtaatgtttcc 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gaattctccaattgccagcattttcccaccatctcaagactacatacatgtaatgtttcc 271

                                                                       
Query: 72  caactatccttcttacaactgacattagaagcatgctgctttcatctagtgaaggttgct 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 caactatccttcttacaactgacattagaagcatgctgctttcatctagtgaaggttgct 331

                                                                       
Query: 132 tgctactggtgacaatcaagattgcaggtaaggaattggcctctgatgttgtcctagacc 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgctactggtgacaatcaagattgcaggtaaggaattggcctctgatgttgtcctagacc 391

                                                                       
Query: 192 acacccaacaaaccacaagagagaggcaaccagacccagttagctttgatttttcaactt 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 acacccaacaaaccacaagagagaggcaaccagacccagttagctttgatttttcaactt 451

                                                                       
Query: 252 gacagcctagagtcatctcagaggaaagcctagactgaggatttgcttctatcagattga 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gacagcctagagtcatctcagaggaaagcctagactgaggatttgcttctatcagattga 511

                                                                       
Query: 312 cctatgagcatatcttggaggagggtctggctggtggtcctgggctgtctaagaaagcta 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cctatgagcatatcttggaggagggtctggctggtggtcctgggctgtctaagaaagcta 571

                                                                       
Query: 372 gctaaatgcgagtgagctagagaacaggccaagaaggagtgtttctccgtggttcctgcc 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gctaaatgcgagtgagctagagaacaggccaagaaggagtgtttctccgtggttcctgcc 631

                                                                       
Query: 432 ttagtttcctgtcttgaatgtcttgtcttctaagatggactatgacctggaagtataagc 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ttagtttcctgtcttgaatgtcttgtcttctaagatggactatgacctggaagtataagc 691

                                                                       
Query: 492 cattcggtttccccctcccatagcttacttttggtccatgtgtttagcacagcaacacaa 551
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 cattcggtttccccctcccatagcttacttttggtccatgtgtttagcacagcaacacaa 751

            
Query: 552 a 552
           |
Sbjct: 752 a 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no416_o04.g1 MSMg01no416_o04.g1 CHROMAT_FILE:
MSMg01no416_o04.g1 PHD_FILE: MSMg01no416_o04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:36 2005
         (472 letters)



>mm_chr6_135538128_135538999
          Length = 872

 Score =  640 bits (331), Expect = 0.0
 Identities = 331/331 (100%)
 Strand = Plus / Minus

                                                                       
Query: 142 aaggcaggaagcatggcagcatccaggtgcaggagaagctgggagttctatatcttcatc 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 aaggcaggaagcatggcagcatccaggtgcaggagaagctgggagttctatatcttcatc 813

                                                                       
Query: 202 tgaaggctgctagaagaatactgacgtccaggcaactaggataagtcttataacccacac 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 tgaaggctgctagaagaatactgacgtccaggcaactaggataagtcttataacccacac 753

                                                                       
Query: 262 ccacagtgacacacctactccaaaaggccatacattctaatcatgccactccctgggttg 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ccacagtgacacacctactccaaaaggccatacattctaatcatgccactccctgggttg 693

                                                                       
Query: 322 agcatatacaaaccatcacatctgccctgtccattgagaaacagagtgtagtatctgggg 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 agcatatacaaaccatcacatctgccctgtccattgagaaacagagtgtagtatctgggg 633

                                                                       
Query: 382 gttgtgtttgtgaatagagactagattttcactttattctttaactgaactttcctttag 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gttgtgtttgtgaatagagactagattttcactttattctttaactgaactttcctttag 573

                                          
Query: 442 tgactatccctcacatcccctgggcctctgg 472
           |||||||||||||||||||||||||||||||
Sbjct: 572 tgactatccctcacatcccctgggcctctgg 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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