BAC Information

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BAC

Clone NameMSMg01-417H18
Chromosome6 (Build37)
Map Location 40,423,383 - 40,423,911
singlet/doubletsinglet
Overlap geneSsbp1
Upstream geneDennd2a, Adck2, Ndufb2, Braf, Fth-ps2, Mrps33, LOC665247, LOC665254, EG434008, Agk, E330009J07Rik, BC052883
Downstream geneTas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417H18.T7 (MSMg01no417_h18.b1)MSMg01-417H18.TJ (MSMg01no417_h18.g1)
ACCAG513053AG513054
length777798
length of high quality
(start - end)		536 (46 - 581)462 (76 - 537)
definitionCHROMAT_FILE: MSMg01no417_h18.b1 PHD_FILE: MSMg01no417_h18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:23 2005CHROMAT_FILE: MSMg01no417_h18.g1 PHD_FILE: MSMg01no417_h18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTGGTGATCTATGCCTTACAACTCCGGGCTGTCTGACACCAAGC
TTGTTTTTCCAACTTGCCCTCTGCTGTCTTACAGGCATTCTGTTCTATGG
TTACCACGCAGGTAAGAAGAGTCTACATCACTACACTCAAGAGAGTTCAG
AGAGCTAGACATGTTCTAAGAGAGAAACATTTCGCACGTGGCAGCATTGT
TAATATAGCAGGCAGGGATCCCCCACACGGGAAAAAAAAAGGGACTGGCA
GGCAGGCCAAAGAATTCTTTTAGGACCTGCGGGCACTGCAGGCTTCAGGC
AGTGGCTGAGGGTGATGCTGTCTGTTTTTGTCTGTCACTCTCACTGTTAG
TGAGTTAGAGAGTTAGAACTTCTCACACTCACTTTCAAGGACATTCTACC
ATATAAGAAGGGTCATTTCAACTGGTCCGTGAGAGCTGCTGTGTTCGTAA
TTTCCAGTTATGCAACTTCTCCATGCAAATGAAGGCAGAGACAGGCTACA
ACTCTGAGGTGACAGGTTACCACATTATGATTTCTAAACCTAGCTTTTTA
AAAATTCCAATGGGGACCTCTTTTCTTCCCTGGNCTTTTTAATACAGCCT
TCTCTCTCCTACCACTCAAATGAACACCTTTTTCCTGGAGTGATTTTAGC
TTTATACTAATCCCTACGAATAATTATTAAAATTAAGATGTTACCGATTA
CGGGACCCAAATGGTTATCTTGTTCTN

CCATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATGCTAAAACTATCTGGTCCTGGG
CTATTTTTTTTGGTTGGGAGACTTTGATGATTGACTCTACTTCCTTAGGA
ATTACAGGACTCTGTACATTGTTTACCTGACCTTGATTTAACTTTGGTAA
GTAGAATCTATCAAGAATTCTATAATACATTTTGTTTAGATTTTCAAGTT
TTGTGGGGTACAGTCTTTTGAAGTAAGACCTAATTATTCTTTGGATGGCA
TCTGTCTCCCTTTTTATTTCTGATTTTGTTAATTTGGACACTGTCTCTCT
GCCTTTTAGTTTATTTAGGTAAGGATTTGTCTATCTTGTTGATTTTCTCA
AAGAACCAGCTCTTAGTTTCATTGATTCTTTGTATTGTTCTCTTTGTTTC
TAATTTATTGATTTCAGCCCTGTCTACCCTTCTTGGGTGTGTTTGCTTTT
TGTTTGGTCTAGGGATTTTAGGCCTGATTTTAAATTGTTAGCATGAGATC
TCTCAAATTTCTTTATAAAAAACCTTAGTGCTCTGAACTTTCCTCTTTAA
CCCAGCTTTTTATTTTGGTCCCATAAATTTGGGAAACTGTCTTAATTATA
GGCTTCTCTTGTTTGGATATAGACCCCCCTGCCCCCTGTCCCCTCTCTTT
TAGCCCTATCACTTTTTCTCTGTGCTCGCCCTTATCGTCTCTCCAGTGTT
TCTTTCTTCCTTTTCCCCTGTTTTCGCACTCCGCCCTCTTCTTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_h18.b1 MSMg01no417_h18.b1 CHROMAT_FILE:
MSMg01no417_h18.b1 PHD_FILE: MSMg01no417_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:23 2005
         (536 letters)



>mm_chr6_40423180_40424111
          Length = 932

 Score =  973 bits (503), Expect = 0.0
 Identities = 524/533 (98%), Gaps = 4/533 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagtggtgatctatgccttacaactccgggctgtctgacaccaagcttgttttt 63
           |||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 732 ggaattcagtggtgatttatgccttacaactccgggctgtgtggcaccaagcttgttttt 673

                                                                       
Query: 64  ccaacttgccctctgctgtcttacaggcattctgttctatggttaccacgcaggtaagaa 123
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ccaatttgccctctgctgtcttacaggcattctgttctatggttaccacgcaggtaagaa 613

                                                                       
Query: 124 gagtctacatcactacactcaagagagttcagagagctagacatgttctaagagagaaac 183
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gagtctacatcactacacacaagagagttcagagagctagacatgttctaagagagaaac 553

                                                                       
Query: 184 atttcgcacgtggcagcattgttaatatagcaggcagggatcccccacacgggaaaaaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 atttcgcacgtggcagcattgttaatatagcaggcagggatcccccacacgggaaaaaaa 493

                                                                       
Query: 244 aagggactggcaggcaggccaaagaattcttttaggacctgcgggcactgcaggcttcag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aagggactggcaggcaggccaaagaattcttttaggacctgcgggcactgcaggcttcag 433

                                                                       
Query: 304 gcagtggctgagggtgatgctgtctgtttttgtctgtcactctcactgttagtgagttag 363
           |||||||||||||||||||    |||||||||||||||||||||||||||||||||||||
Sbjct: 432 gcagtggctgagggtgatg----ctgtttttgtctgtcactctcactgttagtgagttag 377

                                                                       
Query: 364 agagttagaacttctcacactcactttcaaggacattctaccatataagaagggtcattt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 agagttagaacttctcacactcactttcaaggacattctaccatataagaagggtcattt 317

                                                                       
Query: 424 caactggtccgtgagagctgctgtgttcgtaatttccagttatgcaacttctccatgcaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 caactggtccgtgagagctgctgtgttcgtaatttccagttatgcaacttctccatgcaa 257

                                                                
Query: 484 atgaaggcagagacaggctacaactctgaggtgacaggttaccacattatgat 536
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 atgaaggcagagacaggctacaactctgaggtgacaggttaccacattatgat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 932
Length adjustment: 10
Effective length of query: 526
Effective length of database: 922
Effective search space:   484972
Effective search space used:   484972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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