Query= MSMg01no418_d18.b1 MSMg01no418_d18.b1 CHROMAT_FILE:
MSMg01no418_d18.b1 PHD_FILE: MSMg01no418_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:22 2005
(625 letters)
>mm_chr6_5107389_5108414
Length = 1026
Score = 1108 bits (573), Expect = 0.0
Identities = 610/623 (97%), Gaps = 3/623 (0%)
Strand = Plus / Minus
Query: 5 gaattcaggcacgttctcgtccagactgaggctcattaaccagtgggacacctgctgcac 64
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 gaattcaggcacgtactggtccagactgaggctcattaaccagtgggacacctgctgcac 767
Query: 65 actccattcatgaacggcccgattctgactctgagtgtgtttgggagactgtccatcgtc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 actccattcatgaacggcccgattctgactctgagtgtgtttgggagactgtccatcgtc 707
Query: 125 aaggatctgagacagaaatgtatgcagcattggtaaatgacttaaaaagtatggcttata 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 706 aaggatctgagacagaaatgtatgcagcattggtaaatgacttaaaaagtatggctcata 647
Query: 185 ttatgctagtaaaggaatttctcaagttacaagagctgcatttacttgtaaatcatacat 244
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ttatgctagtaaagtaatttctcaagttacaagagctgcatttacttgtaaatcatacat 587
Query: 245 aagagttctactttatgttagaagaaacatgtctattacctatctgattctggtagatgg 304
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 aagagttctac-ttatgttagaagaaacatgtctattacctatctgattctggtagatgg 528
Query: 305 aaatctaaagatatcccattaaaaaagtaccattaaaggtgtaggaagttaaaaaatcaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 aaatctaaagatatcccattaaaaaagtaccattaaaggtgtaggaagttaaaaaatcaa 468
Query: 365 aaaaatacatactgacattgatgattttataataagtaagcctgaagatatagttacatg 424
|||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aaaagtacacactgacatggatgattttataataagtaagcctgaagatatagttacatg 408
Query: 425 tggaaaataattatttcatagttctgcacatgtgatacatcatttaaatttattctgtta 484
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 407 tggaaaataattatttcatagttctgtacatgtgatacatcatttaaatttattctgtta 348
Query: 485 gaagacagtaaag--atatttaaaatactttaaaaatatcaaggtctcctttattctaca 542
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 347 gaagacagtaaagttatatttaaaacactttaaaaatatcaaggtctcctttattctaca 288
Query: 543 ggaaaagtctcaaagcccccaagccttcacagggaaacttcacagctattgttttatcgt 602
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ggaaaagtctcaaagcccccaagccttcacagggaaacttcacagctattgttttatcgg 228
Query: 603 agcagaaagcacacctctgtgga 625
|||||||||||||||||||||||
Sbjct: 227 agcagaaagcacacctctgtgga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1026
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1016
Effective search space: 624840
Effective search space used: 624840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no418_d18.g1 MSMg01no418_d18.g1 CHROMAT_FILE:
MSMg01no418_d18.g1 PHD_FILE: MSMg01no418_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:23 2005
(536 letters)
>mm_chr6_4971612_4972547
Length = 936
Score = 986 bits (510), Expect = 0.0
Identities = 528/534 (98%)
Strand = Plus / Plus
Query: 1 attttgtagaccaggctggcctcgaactcagaaatctgcctgcctctgcatgtttcctgt 60
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 201 attttgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctgtttcctgt 260
Query: 61 attttacagtgaagcagcctctatttttctctctgttctcatgagagttgggcatattct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttacagtgaagcagcctctatttttctctctgttctcatgagagttgggcatattct 320
Query: 121 gttctgttaaatctttgatttgtcactttcccacttacttagacaccactttcaaacacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttctgttaaatctttgatttgtcactttcccacttacttagacaccactttcaaacacg 380
Query: 181 ggtacttccttctacaaactaactttattgtcattgtttgggattagaagtgtttgctaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtacttccttctacaaactaactttattgtcattgtttgggattagaagtgtttgctaa 440
Query: 241 gggcattgcttgtatttcaaccagtgcagccatgttgctggattaaaatccctatacgca 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 gggcattgcttgtatttcaaccagagcagccatgttgctggattaaaatccctatacgca 500
Query: 301 aataatatttatctttccctataaagggtctgatgccatttggcttctcttgaactcctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aataatatttatctttccctataaagggtctgatgccatttggcttctcttgaactcctt 560
Query: 361 tccatcttgtttccctacatatgttttcttgccagaaagtggggattagcattaggttcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccatcttgtttccctacatatgttttcttgccagaaagtggggattagcattaggttcc 620
Query: 421 gtggtaggtagttctcaatacgaaacgcaccttgtaaaaccttcttctagtttttctcta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtggtaggtagttctcaatacgaaacgcaccttgtaaaaccttcttctagtttttctcta 680
Query: 481 tgcctaacgctcccacactttctgttgcctttctcgagtgaaatatactgatta 534
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 681 ggcctaacgctcccacactttctgttgcctttctccagtaaaatatactgatta 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
