BAC Information

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BAC

Clone NameMSMg01-418P14
Chromosome6 (Build37)
Map Location 45,782,476 - 45,783,027
singlet/doubletsinglet
Overlap geneCntnap2
Upstream geneLOC100040210
Downstream geneRbpsuh-rs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418P14.T7 (MSMg01no418_p14.b1)MSMg01-418P14.TJ (MSMg01no418_p14.g1)
ACCAG514184AG514185
length728728
length of high quality
(start - end)
442 (75 - 516)581 (77 - 657)
definitionCHROMAT_FILE: MSMg01no418_p14.b1 PHD_FILE: MSMg01no418_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:19 2005CHROMAT_FILE: MSMg01no418_p14.g1 PHD_FILE: MSMg01no418_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATCTTGTGTTTTCAGTAATACACTGCATGTATCCACCAC
ACTCGAATTTTCTTTGCTTTTCTTTTTATTAGATATTTTCTTTATTTACA
TTTCAAATGTTGTCTTTTTTATGGTTTCCCCTCTTTGATTGGTGGCTTTT
CCCCTGGGAGCTCTGGAAGTACTGGTTGGTTCATATTCTTGTTCCTCCTA
TAGGGCTGAAAGCTCCTTCAGCTCCTTCTGTCCTATCTCTAGCTCCTCCA
TTGGGGACCTTGTGGTCAGTCAGAGCCTCTCAGGAGACAGCTATGTCAGG
CTCCTCTCAGTAAGCACTTGGTGGCATCCATAATAGTGTCTGGGCTTGGT
GTTTGTATGTGGTATGCATTCCCAGGTGGGGCAGTCTCAGGATGGCCTTT
TCTTCAGTCTCTGCTCCACACTTTGTCTCCATATCTCCTCTCATAGGTAT
TTTGTTCCCCTTTCTAATAAGAACCAGAGTATCCTTACTTTGGTCTTCCT
TCTTTTTGATCTTCATTTGGCCTCTGAATTGTATCTTGGGAATTCTGAGA
CTCTGCACTAATATCCCCCATTCAGTGAGTGTATATCATGTGTGATCCTT
TTGTGATTGGCCTAACCCAACTAAGATGCATTTTTTCTATTACCCTTCCC
TCTGCTACCATTTTCTTTGAATTCAATG
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGATCAAATAGCAGAGAAGAGAGC
CAGTACAATACTATCCTTCAGGAAGACAGGAAGAGACTGAGATGTGTAAG
AAAGAAAAATCAGGAAAATGAATAGAGAGGAAGAGGAGAAGGGGGACAGA
ATGGGAAAGAGAAGAATAAGCAGAAGAGGAGGAGGAAAGGAAAGAAAAGA
AAAAAGGAGCAAGAAAAGTTAATAGGAAAAAACAGTGTATTTGTCTGTGA
CCTGAGCACATAGCATTTCATATGTGTATTTATATGGGAACATGAAGAAC
TATTAGAGCATGCACATGTTCTACTTTGTCGTAGCTTCCTAAATCAAGCC
CAAATGGAACACACAATTTTACTGTGTGGATGTACTCTTACAGTTGTCTG
CTCATTTGGTTCTGACACAACGACACTGTCAAAAGAGTTGATGTATATCC
AGAAACAAGCAGTTAGTGTGTCTCTGATGTGGGCCCACAGTACTGTATTC
AGGGGCTTGACAACCTGATTTGTGTGGCATAGTTACAGAAACAGAACATT
AAAGAATTTCTCCAGAAATATGAGTAGAAAACATCCAGATATGTAAAGAA
AGTGAGCATAAATAAATGTTTGATGTTGTGCTTGTATTCTTAAGCTTCCC
AGGGATATTATAAAACTCCAGATAGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_p14.g1 MSMg01no418_p14.g1 CHROMAT_FILE:
MSMg01no418_p14.g1 PHD_FILE: MSMg01no418_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:20 2005
         (581 letters)



>mm_chr6_45782279_45783259
          Length = 981

 Score =  897 bits (464), Expect = 0.0
 Identities = 538/584 (92%), Gaps = 35/584 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgatcaaata-gcagagaagagagccagtacaatactatccttcaggaagacaggaagag 59
           |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 198 tgatcaaataagcagagaagagagccagtacaatactgtccttcaggaagacaggaagag 257

                                                                       
Query: 60  actgagatgtgtaagaaagaaaaatcaggaaaatgaatagagaggaagaggagaaggggg 119
           ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 258 actgagatgtgtaagaaagaaaaattaggaaaacgaatagagaggaagaggagaaggggg 317

                                                                       
Query: 120 acagaatgggaaagagaa--gaataagcagaagaggaggaggaaaggaaagaaaagaaaa 177
           |||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 acagaatgggaaagtgaaaagaataagcagaagaggaggaggaaaggaaagaaaagaaaa 377

                                                                       
Query: 178 aaggagcaagaaaagttaataggaaaaaacagtgtatttgtctgtgacctgagcacatag 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aaggagcaagaaaagttaataggaaaaaacagtgtatttgtctgtgacctgagcacatag 437

                                                                       
Query: 238 catttcatatgtgtatttatatgggaacatgaagaactattagagcatgcacatgttcta 297
           |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 438 catttcatatgtgtatttgtatgggaacataaagaactattagagcatgcacatgttcta 497

                                                                       
Query: 298 ctttgtcgtagcttcctaaatcaagcccaaatggaacacacaattttactgtgtggatgt 357
           ||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 498 ctttgtcatagctacctaaatcaagcccaaatggaagacacaattttactgtgtggatgt 557

                                                                       
Query: 358 actcttacagttgtctgctcatttggttctgacacaacgacactgtcaaaagagttgatg 417
           ||||||||||||||||                                ||||||||||||
Sbjct: 558 actcttacagttgtct--------------------------------aaagagttgatg 585

                                                                       
Query: 418 tatatccagaaacaagcagttagtgtgtctctgatgtgggcccacagtactgtattcagg 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tatatccagaaacaagcagttagtgtgtctctgatgtgggcccacagtactgtattcagg 645

                                                                       
Query: 478 ggcttgacaacctgatttgtgtggcatagttacagaaacagaacattaaagaatttctcc 537
           |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 646 ggcttgacaacctgatttgtgtggtataggtacagaaacagaacattaaagaatttctcc 705

                                                       
Query: 538 agaaatatgagtagaaaacatccagatatgtaaagaaagtgagc 581
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 agaaatatgagtagaaaacatccagatatgtaaagaaagtgagc 749


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)