BAC Information

Click to search

BAC

Clone NameMSMg01-419B22
Chromosome6 (Build37)
Map Location 18,703,864 - 18,869,929
singlet/doubletdoublet
Overlap geneEG545829, Lsm8, Ankrd7
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419B22.T7 (MSMg01no419_b22.b1)MSMg01-419B22.TJ (MSMg01no419_b22.g1)
ACCAG514296AG514297
length794780
length of high quality
(start - end)		341 (57 - 397)484 (64 - 547)
definitionCHROMAT_FILE: MSMg01no419_b22.b1 PHD_FILE: MSMg01no419_b22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:31 2005CHROMAT_FILE: MSMg01no419_b22.g1 PHD_FILE: MSMg01no419_b22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,703,864 - 18,704,194)(18,869,446 - 18,869,929)
sequence
NNNNTTTTCAATATTTGGGGCGCTATACGACTCCTATATCTTGAGGACCG
CGGAATTCTCTGAATTCTTATTTGAGAATGTAATTAAATATTTACCCATA
GAGTTGTTATTGGCAGACAGCAGCCTATTTAAGAAGGTATGGTTGCAGTT
TTCACTGCTCTGGCCCATAATAATTATATAATTTACAGTGGCTATTATGA
TTTAAGAAAAAGTTATAGATAAATAATCATTTACCCATCTGGACATTTTT
CCTTATCTCCATTTAGTTAACTATAGAAAAACAATAGAACTGGTGACAGA
ACAACTTTTGAATGTCCTCTAAGGATACAGATGTCATCCAGTGAAGACAA
AGTGAAAGACGATGTGGTGTTAAGAAAACTGTGGTTGATGGCGGTCAGTA
AAAAGGGTATGGTCCCTGAACATTGGGGAAAGATGTACGATATATTATTC
TATCTAGAGNCATGTACTGGTTCTTACTCACCCTGACTAAAGGGAGGTCT
CTGTATTAATCACCACCTATAACAAAAAAAACCTTTTATGAAGATTGACT
TGGTGGGTTTAAAAAAAAAAAGGAACGGACCCATTTGGTTGGGGAAATAA
AAAAAATTGTGGCTACCCCAATGGATTTTTTTTGCCTCCTTAACCTGAAA
TTTACCCGAAAATTGGGGGAAGACAAAATTAACCACAATTCGCTTCGGGA
AAAAAGAGCCCGGGGGGGGCGAAAACACAAAANCCCGGTAANTTTCTTCC
TCTCCATTACAACCCCCCCCCCCCCCACCCCCCCTTACGAAAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCCATGAACACAGAAAGTAGATGTAGCCCTCATATTC
CATACTCAGTAATAAGACAAATAGCCAAACACTGCTGCTGAAACCTTTCC
TGATATGCAATCATTTAAAGTAGCTGGGAATGTTATTTTAGATTTCTACT
GATGATTCCATGAGCCTCCCTTCTCAAGAACAATGTATACATTTTAACAC
ATAGAGAAATCACTAATAGAATAGACCTAGCAAATTATTAGACAAAATAT
AATAATAAAAACATATGTACTAGAAAAGGCAGCAAAGAAGAGAAAAAAAG
AAAGAATAGATTGCTACAAAAATAAGTACTGATAGACTTAAAGACAAATA
TTACTTTAATTTCACTGTAAAAAGGAATTGATGAAGTACTCTAAATAAAA
AACAAGAAATTTCCTGAACAATGATTAAGAAAGAAATTAAGAAACAATTG
TTTTTAATCATAGATTTAAGTAAAACTGAAAGATCTATAACCGAGGTGGC
TGAGAGGAAAATTCTTGAGTATGAGTGTTTACCCTGAAAATCAGAGCAGC
CTCCAATAAATAATACAGGGAAGCACTCAAGGTCTTATAGAACCANGNAC
AGACAACCCACAAGGAAGCCAAATACCAGACTTAGTAAGATCCGGACCGA
AATATGGGAATGTGGCCCCAAAAAAATAAGTACCAAACCCGGTGGATCTT
AACAAAAAAAAGAAAAAAAGCCCGGCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_b22.b1 MSMg01no419_b22.b1 CHROMAT_FILE:
MSMg01no419_b22.b1 PHD_FILE: MSMg01no419_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:31 2005
         (341 letters)



>mm_chr6_18703654_18704394
          Length = 741

 Score =  632 bits (327), Expect = 0.0
 Identities = 330/331 (99%)
 Strand = Plus / Plus

                                                                       
Query: 11  cttatttgagaatgtaattaaatatttacccatagagttgttattggcagacagcagcct 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 cttatttgagaatgtaattaaatatttacccatagagttgttattggcagacagcagcct 270

                                                                       
Query: 71  atttaagaaggtatggttgcagttttcactgctctggcccataataattatataatttac 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 atttaagaaggtatggttgcagttttcactgctctggcccataataattatataatttac 330

                                                                       
Query: 131 agtggctattatgatttaagaaaaagttatagataaataatcatttacccatctggacat 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 agtggctattatgatttaagaaaaagttatagataaataatcatttacccatctggacat 390

                                                                       
Query: 191 ttttccttatctccatttagttaactatagaaaaacaatagaactggtgacagaacaact 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ttttccttatctccatttagttaactatagaaaaacaatagaactggtgacagaacaact 450

                                                                       
Query: 251 tttgaatgtcctctaaggatacagatgtcatccagtgaagacaaagtgaaagacgatgtg 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 451 tttgaatgtcctctaaggatacagatgtcatccagtgaagacaaagtgaaagacgatgtt 510

                                          
Query: 311 gtgttaagaaaactgtggttgatggcggtca 341
           |||||||||||||||||||||||||||||||
Sbjct: 511 gtgttaagaaaactgtggttgatggcggtca 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no419_b22.g1 MSMg01no419_b22.g1 CHROMAT_FILE:
MSMg01no419_b22.g1 PHD_FILE: MSMg01no419_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:31 2005
         (484 letters)



>mm_chr6_18869246_18870129
          Length = 884

 Score =  920 bits (476), Expect = 0.0
 Identities = 482/484 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccatgaacacagaaagtagatgtagccctcatattccatactcagtaataagacaaata 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 684 tccatgaacacagaaagtagatgtagccctcatattccatactcagtaataagacagata 625

                                                                       
Query: 61  gccaaacactgctgctgaaacctttcctgatatgcaatcatttaaagtagctgggaatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gccaaacactgctgctgaaacctttcctgatatgcaatcatttaaagtagctgggaatgt 565

                                                                       
Query: 121 tattttagatttctactgatgattccatgagcctcccttctcaagaacaatgtatacatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tattttagatttctactgatgattccatgagcctcccttctcaagaacaatgtatacatt 505

                                                                       
Query: 181 ttaacacatagagaaatcactaatagaatagacctagcaaattattagacaaaatataat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttaacacatagagaaatcactaatagaatagacctagcaaattattagacaaaatataat 445

                                                                       
Query: 241 aataaaaacatatgtactagaaaaggcagcaaagaagagaaaaaaagaaagaatagattg 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aataaaaacatatgtactaggaaaggcagcaaagaagagaaaaaaagaaagaatagattg 385

                                                                       
Query: 301 ctacaaaaataagtactgatagacttaaagacaaatattactttaatttcactgtaaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctacaaaaataagtactgatagacttaaagacaaatattactttaatttcactgtaaaaa 325

                                                                       
Query: 361 ggaattgatgaagtactctaaataaaaaacaagaaatttcctgaacaatgattaagaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggaattgatgaagtactctaaataaaaaacaagaaatttcctgaacaatgattaagaaag 265

                                                                       
Query: 421 aaattaagaaacaattgtttttaatcatagatttaagtaaaactgaaagatctataaccg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaattaagaaacaattgtttttaatcatagatttaagtaaaactgaaagatctataaccg 205

               
Query: 481 aggt 484
           ||||
Sbjct: 204 aggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |