BAC Information

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BAC

Clone NameMSMg01-419D21
Chromosome6 (Build37)
Map Location 82,754,187 - 82,754,436
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166, EG622198, Tacr1, Pole4, LOC100043412, Hk2
Downstream geneEG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419D21.T7 (MSMg01no419_d21.b1)MSMg01-419D21.TJ (MSMg01no419_d21.g1)
ACCAG514390AG514391
length766781
length of high quality
(start - end)
268 (54 - 321)250 (66 - 315)
definitionCHROMAT_FILE: MSMg01no419_d21.b1 PHD_FILE: MSMg01no419_d21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:41 2005CHROMAT_FILE: MSMg01no419_d21.g1 PHD_FILE: MSMg01no419_d21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTCTATAATTTGCGGNCGCTAAANGAATCACTATATCCAGAGGATCC
GCGGAATTCTTCCTTTCTCTCTTTCTTCCTTTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTTTT
TTTTTTTGAGACAGGGCTTCTCTGCATAGCTCTGGCTATCCTGGAACTCA
CTTTGTATACCAAGATGGCCTCAAACTCAGATATCTGCCTGCTTCTGCCT
CCTGAGTGCTGGGATTAAAGGTTTTCTCCACTACCACCTGGCTATAGATA
CACATTTCTAACCGATATTGTCCTTCTTCTCACCCTTCTCAAGTATGATT
TCATACAAACTGTAGCTTGATGAATTATTTCCTCTTAATACTAGATATTT
CATTTTATCATCTTTTTATTTTGAATGATTTTGAAGAAGCTGAATCTAAC
CCTTGCTCCTCCCTTTCATTCCTGTTAGACCTCTTTCTTTCATGAGCCCG
TTTTTGTCTTACTTTATTACTTTATTGCCTGTATGCGTAAGATTTTATAT
ATTCCGCCCAAAGCCCCTATACCACCCCTGCAAAATAAGCGGACTTTGTT
CCCTTTGGTTTTGTCCTCTATTTTTTCAGTTTAGAAAACCCTGCGGTTTG
TTTTTTTTTCTTTTAACCGGCGGTCGTATATATGCTTATTTTGTCTCCCC
TTTTACCCCAATTTCG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXATTCCTTGGGACTCACATGGCAGAAGAAGAAAACC
AGCTTTTGCAAATTGTCTTCTGACTTCCACATTGGTACTACGGCAGAATG
CTTCCCCCACCAAATCTGGGGTGGTGGTCCATGCCTGTCATTTCAGCCCT
CATGATGTGGAGAAGGAGAATCACAAGTTTATGGTTATCCAGCATAGTGA
GTTCAAGATCAGCCCTGGCTACAGGAGGCTTCGTCTCAATTTTTTAAAAA
TTGAAGTTAAAAATATTTTTTTTAGAAAGAAAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGA
AAGAGAGTAGCCTAAGAGATATCATCACACCCTCTAGGTTATCCAAGGCC
CTTCACATTTCTGCCACTCTCCTCACGTTCTTTCCTCCCTCAAGCACAGC
ATCTTTAGCCCCATCCTACACATGTAAAACCTTCACAACACTCCTGCTTT
GATCAAGATCCACCACCCACAGGTCCAGTGCAAGCTTCCCCAAATGGGGA
TTCCTTCATTAATTACCTTTTCCAAAAAAGTTCTTTCCCCCTTTGAGCCA
AACTCTTCCCCCTGAATTGTAAAAAATGGAAAAATAANGTTTCTCTAACC
CTTTTTGAAATTTTTTTTAACAGTGCTATAAGCGAGGTTTTTCCTAAAAA
TGATATTATGTTCTTTTTTTCTTTTACTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_d21.g1 MSMg01no419_d21.g1 CHROMAT_FILE:
MSMg01no419_d21.g1 PHD_FILE: MSMg01no419_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:42 2005
         (250 letters)



>mm_chr6_82753987_82754636
          Length = 650

 Score =  468 bits (242), Expect = e-136
 Identities = 248/250 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attccttgggactcacatggcagaagaagaaaaccagcttttgcaaattgtcttctgact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attccttgggactcacatggcagaagaagaaaaccagcttttgcaaattgtcttctgact 260

                                                                       
Query: 61  tccacattggtactacggcagaatgcttcccccaccaaatctggggtggtggtccatgcc 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccacattggtgctacggcagaatgcttcccccaccaaatctggggtggtggtccatgcc 320

                                                                       
Query: 121 tgtcatttcagccctcatgatgtggagaaggagaatcacaagtttatggttatccagcat 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcatttcagccctcatgaggtggagaaggagaatcacaagtttatggttatccagcat 380

                                                                       
Query: 181 agtgagttcaagatcagccctggctacaggaggcttcgtctcaattttttaaaaattgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgagttcaagatcagccctggctacaggaggcttcgtctcaattttttaaaaattgaa 440

                     
Query: 241 gttaaaaata 250
           ||||||||||
Sbjct: 441 gttaaaaata 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)