Query= MSMg01no420_g01.b1 MSMg01no420_g01.b1 CHROMAT_FILE:
MSMg01no420_g01.b1 PHD_FILE: MSMg01no420_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:12 2005
(234 letters)
>mm_chr6_54791666_54792299
Length = 634
Score = 451 bits (233), Expect = e-131
Identities = 233/233 (100%)
Strand = Plus / Plus
Query: 1 gacatattatatgtgtgctttaagtcatttgaactttgtaagcatgtatctaaacaataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacatattatatgtgtgctttaagtcatttgaactttgtaagcatgtatctaaacaataa 260
Query: 61 taatgatgataatagtaataaagttagatgaagtagaggagcatttagcaaaatgttttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatgatgataatagtaataaagttagatgaagtagaggagcatttagcaaaatgttttt 320
Query: 121 ggcttgaagtaaaatcttttaaaatgaaagctaacatcctattagatttattaaattctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcttgaagtaaaatcttttaaaatgaaagctaacatcctattagatttattaaattctc 380
Query: 181 tatcaacaatttatgttcagtgccaggtttcacacaatgtaaaagagacatgg 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatcaacaatttatgttcagtgccaggtttcacacaatgtaaaagagacatgg 433
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space: 140625
Effective search space used: 140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no420_g01.g1 MSMg01no420_g01.g1 CHROMAT_FILE:
MSMg01no420_g01.g1 PHD_FILE: MSMg01no420_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:12 2005
(581 letters)
>mm_chr6_54946542_54947522
Length = 981
Score = 1054 bits (545), Expect = 0.0
Identities = 569/581 (97%), Gaps = 7/581 (1%)
Strand = Plus / Minus
Query: 1 actgattctcacaaaatggaaacacgatttacaagatctcttacaaagatctgcatcaaa 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 824 actgattctcacaaaatggaaacacgatttacaagatctctta-------ctgcatcaaa 772
Query: 61 ctctttctaaaatttaagtacaagggggggaaatgacactttttaggcttctaggtcaag 120
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 771 ctctttctaaaatttaagtacaagggggaaaaattacactttttaggcttctaggtcaag 712
Query: 121 ctcctatagtttactctgatatgaagctaatggtgacctcgtaagatatgacaaggacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 711 ctcctatagtttactctgatatgaagctaatggtgacctcgtaagatatgacagggacag 652
Query: 181 ctaaacattgatgtttttcatgggaattctaggcaatgtgagtctccactctacagtacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ctaaacattgatgtttttcatgggaattctaggcaatgtgagtctccactctacagtacc 592
Query: 241 ttgaatctgggcaatgtgtaaatatcacaatttacgtgatagttataatagtttgtttac 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ttgaaactgggcaatgtgtaaatatcacaatttacgtgatagttataatagtttgtttac 532
Query: 301 ttttaagtgtataatttatgattgttgcatatagtattttatttattgatgtactaatac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ttttaagtgtataatttatgattgttgcatatagtattttatttattgatgtactaatac 472
Query: 361 attaacatgtaatattacccttataatgtgacataatgctaggtatgcctttactgtata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 attaacatgtaatattacccttataatgtgacataatgctaggtatgcctttactgtata 412
Query: 421 atcacataggttaatagatacaattgtatttgtacatgctcaaaaaattttaatgtcaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 atcacataggttaatagatacaattgtatttgtacatgctcaaaaaattttaatgtcaca 352
Query: 481 atcaaaaaacctgaaagacaactgattaaaagatgcactcggaagacatctggccttgct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 atcaaaaaacctgaaagacaactgattaaaagatgcactcggaagacatctggccttgct 292
Query: 541 attgttatcatcaaatgactgaaggctagcaccaatgttgt 581
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 attgttatcatcaaatgactgaaggctagcaccaatgttgt 251
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
