BAC Information

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BAC

Clone NameMSMg01-420H02
Chromosome6 (Build37)
Map Location 16,757,239 - 16,757,747
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041116
Downstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1, Met, Capza2, St7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420H02.T7 (MSMg01no420_h02.b1)MSMg01-420H02.TJ (MSMg01no420_h02.g1)
ACCAG515307AG515308
length701744
length of high quality
(start - end)
---509 (70 - 578)
definitionCHROMAT_FILE: MSMg01no420_h02.b1 PHD_FILE: MSMg01no420_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:17 2005CHROMAT_FILE: MSMg01no420_h02.g1 PHD_FILE: MSMg01no420_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCACTCACAATATGTGGGGCGATAAGAGACTTATTTCGAGAGAGGAGC
GGAGAACTCTTTTTCTACACACCCTGTGTGTTTCTCCCCACAATACTCAC
TATATATCTCTGTGTATCCCCTGACACACAGTATATACCACCACTGTGCT
GTGACTCTCACATATCTCCTGTGGTTAAAGGAGCACACTGAGCAGCAGAA
TATTTTTTACATCTATCTATATCTCTCTCTCTCTCTCTATCTACTCTATA
TATATATCTATCTATATATCTCTCTCTATATATATCTCTCTCTAACCTCT
ATATATATCTCTATCTATGTGTGCGCACACACATAGCGCGACACAGAACA
CCTTGTGTGACAATGTGCTCTTCTCCCCCACGTGTGTCTCTGGAAAAGAG
AGCGCTCTCAGACGAGCCCAGACCCATACCTCCACACACGCGTATATACA
CATATATGTGCAATAAAATATATATGCGCTTTTTCTCGTGTACTCCAGTG
GGGGCGGGGCGCATGTAGCCACACATGTGAGAGAAATAGTGTGTGTATCT
CTCTAAGAACATATCCTCACAAAGGTAGCGCTCATACCCCGTCTCAAAAC
ATTCTTTAACATCTCTGCGGTATATAGACAGAGTTTTTCTGTGGTGCTCA
CACTCCGGTGTGCCCTTCTTGTAAGGCACTTCCTTATGGTATAATGGGGG
A
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACATGGATAATTGTGTATATGCAAACTTTAT
ATGCATATGTCTCTACACATCACATTCATTTTTTAATTAATTATTTTATT
TATTTACACATTGGTCCCCTCCTGCGCCCCCTTCCCTTCCCCTCAGAGTG
TGCTCCCCACTCCCAGAACCCCCTCCTCTTTGTGGCATCAAGTCCCCACA
GGATCAGGAACATCCTCTCTCACTGTCACTCTCATCTTTTCAAACAGATG
TTAGGAATGGAAAACATGAGAGAAAATAGATGAAATTAAATTCAATGAAG
TGCACAGACTGACGCAAACATAAGATATACTGCAAGGTGAAAATCTTTGG
CTGGGACTTCTGAGAGCTTCCTCTCCAGCAGGGCCTGTGGGACTGTCACA
GTCCTAGGATGCAAGTGGATTACAATACAGGGCAGATGCCTGATGCTTTG
AAGTTACTCAAGCATATACATATACATTTACATACGCATGTGCATATACA
TATATATACATATATATTATATAATGTGTATGTAGCTTCTTGTAATTTCC
AAAGTATTCAAAGGATCAATCCAACTCATGCTTTAATTTTAATTTTTAAC
TTTTTCACTGAAAAAGGATTCTTTTCACCAATACATAATCAGTTTTCCCC
TTCCCCCAGTTTTCTTCCTATCACCTCCTCCTCCCCAGAATCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_h02.g1 MSMg01no420_h02.g1 CHROMAT_FILE:
MSMg01no420_h02.g1 PHD_FILE: MSMg01no420_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:17 2005
         (509 letters)



>mm_chr6_16757039_16757947
          Length = 909

 Score =  984 bits (509), Expect = 0.0
 Identities = 509/509 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatggataattgtgtatatgcaaactttatatgcatatgtctctacacatcacattcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatggataattgtgtatatgcaaactttatatgcatatgtctctacacatcacattcat 260

                                                                       
Query: 61  tttttaattaattattttatttatttacacattggtcccctcctgcgcccccttcccttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttaattaattattttatttatttacacattggtcccctcctgcgcccccttcccttc 320

                                                                       
Query: 121 ccctcagagtgtgctccccactcccagaaccccctcctctttgtggcatcaagtccccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctcagagtgtgctccccactcccagaaccccctcctctttgtggcatcaagtccccac 380

                                                                       
Query: 181 aggatcaggaacatcctctctcactgtcactctcatcttttcaaacagatgttaggaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggatcaggaacatcctctctcactgtcactctcatcttttcaaacagatgttaggaatg 440

                                                                       
Query: 241 gaaaacatgagagaaaatagatgaaattaaattcaatgaagtgcacagactgacgcaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaaacatgagagaaaatagatgaaattaaattcaatgaagtgcacagactgacgcaaac 500

                                                                       
Query: 301 ataagatatactgcaaggtgaaaatctttggctgggacttctgagagcttcctctccagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataagatatactgcaaggtgaaaatctttggctgggacttctgagagcttcctctccagc 560

                                                                       
Query: 361 agggcctgtgggactgtcacagtcctaggatgcaagtggattacaatacagggcagatgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agggcctgtgggactgtcacagtcctaggatgcaagtggattacaatacagggcagatgc 620

                                                                       
Query: 421 ctgatgctttgaagttactcaagcatatacatatacatttacatacgcatgtgcatatac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgatgctttgaagttactcaagcatatacatatacatttacatacgcatgtgcatatac 680

                                        
Query: 481 atatatatacatatatattatataatgtg 509
           |||||||||||||||||||||||||||||
Sbjct: 681 atatatatacatatatattatataatgtg 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)