BAC Information

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BAC

Clone NameMSMg01-420M07
Chromosome6 (Build37)
Map Location 18,995,007 - 19,126,326
singlet/doubletdoublet
Overlap geneLOC626180
Upstream geneAsz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneEif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420M07.T7 (MSMg01no420_m07.b1)MSMg01-420M07.TJ (MSMg01no420_m07.g1)
ACCAG515554AG515555
length806729
length of high quality
(start - end)
192 (378 - 569)547 (76 - 622)
definitionCHROMAT_FILE: MSMg01no420_m07.b1 PHD_FILE: MSMg01no420_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:43 2005CHROMAT_FILE: MSMg01no420_m07.g1 PHD_FILE: MSMg01no420_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,126,137 - 19,126,326)(18,995,007 - 18,995,553)
sequence
NNNNNNNNNNNTTTCCGCCTCTTCCAAAACCACCCAAACCCCAACCCCCA
ATAAATTGCGGCCGCAAAAAGAANNACAATTTTTCACCACAGCGGNNGGA
ANNCNGNCNCTCTAACGNAAAAGAGGAGGANCACNANGGNGAAANGCACG
CAGCGAGNANNNANCGGCAAAGACACACAAACNAACNACAACANCAGACN
NAACCAGCCGGCGGAAAANAGGGAAANCCAAAGGNACAACCCGAACNCAC
NACAACACCCCGACCCAAGACGCAGACACCCAACCANACGCAAACCACGA
CAGCAAAGGCNAACNANANAAACNCGGCCACACNNACANCACAGAGCNAA
GGAAACCCCAGGACANCACTGTGTTTCTTGATTATAACTATCTTGAGTGA
TCTTAAACAGTGGCAAGGTCGATATCGTTAAAGATTAATCTGTGGAAAGT
TCAGTCTCTGCCTGAGTTATAGAAATCTGCAGGGAACAAGTGTTGGATGA
AATTTAATGTGATAAAGCTGAGTAAAGCACAAAAGTCATGATTTTCCATG
ATCCCCTCAGAGAGATGCGGTCACTATGCAATTAATTAGTGAGAAAATCA
AGGAGAAGCAGTCTTTTCCAAGAGATAACTGAGGCAAAAAATGATTGATT
AAAGAGGTGCTAGATTCCCATCACATGATTTAAACAATTCCAGGGGAAAT
TTTAATGAACTGGAATTAAAGAAATAACGAGATCACCTACCCGTTTCTCG
AGAAATCCCGCGGATACCCCGACCAAATCAAATTTCACTTTCACTTTATA
AGTTCT
TXXXXXXXXXXXXXXXXXXXXXXXXXATCCAAAACTGGGGTGACACTATA
NAAGGTTACGCAAAATGCCTTTTGNAAAATTAAAGATGTTTGATGTAATA
TCTGGTCTATGTTTTGTTTATTCCTTATGTAAGTATTATTTTAACTGCAG
TCCTGCTCTGTTTATTAATCTATAGTACATTCAGTCTATCATATGTATCA
CAAGAGTAACGAATCACTCCTGCTCCTTGCTTGTCAATCACTGACAGTGA
AGCACTGTTTCCACTTCATTCTCACGATGTTTATATTTACCTCTGGACAT
GCCCAGTATTTCTTTCTTTATATATTTCTAAGAGATGGGAAGTAGTCTTT
GTTTCTACTTTCAGAAACACAATATTTTTGAGATATTTCTTATAGTGTGC
ACTATCAAAAGATTAAGATTTACAAATATATTCATATGGACTTCTAAGAA
AGGCTAGGTTAAGGATGAGTTGTTTAGTCCCTCAATATTTTTATTTTGGA
GATTTAATACCCTTGGATATCTATAAAGTCTGTTGTGGGAATACGTTATG
GAGAATGTAAATAACCTCTGTCTCTTTTTCATTTATTTAAATTAATGCAG
ATCAGCATAGCGACTGTTCTAGTGGGTTCGTATCGTGTCATAAAGGCGAT
GTTAATATCTCTCTCTCACGCGGTCTCGCTATAAAATCAGAAAATACAAC
AAAGGTACCTTATTGACATCTGGTATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_m07.b1 MSMg01no420_m07.b1 CHROMAT_FILE:
MSMg01no420_m07.b1 PHD_FILE: MSMg01no420_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:43 2005
         (192 letters)



>mm_chr6_19125937_19126528
          Length = 592

 Score =  360 bits (186), Expect = e-104
 Identities = 189/190 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgattataactatcttgagtgatcttaaacagtggcaaggtcgatatcgttaaagatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ttgattataactatcttgagtgatcttaaacagtggcaaggtcgatatcgttaaagatta 331

                                                                       
Query: 61  atctgtggaaagttcagtctctgcctgagttatagaaatctgcagggaacaagtgttgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 atctgtggaaagttcagtctctgcctgagttatagaaatctgcagggaacaagtgttgga 271

                                                                       
Query: 121 tgaaatttaatgtgataaagctgagtaaagcacaaaagtcatgattttccatgatcccct 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 270 tgaaatttaatgtgataaagctgagtaaagtacaaaagtcatgattttccatgatcccct 211

                     
Query: 181 cagagagatg 190
           ||||||||||
Sbjct: 210 cagagagatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no420_m07.g1 MSMg01no420_m07.g1 CHROMAT_FILE:
MSMg01no420_m07.g1 PHD_FILE: MSMg01no420_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:43 2005
         (547 letters)



>mm_chr6_18994807_18995753
          Length = 947

 Score = 1035 bits (535), Expect = 0.0
 Identities = 544/547 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaattaaagatgtttgatgtaatatctggtctatgttttgtttattccttatgtaagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaattaaagatgtttgatgtaatatctggtctatgttttgtttattccttatgtaagta 260

                                                                       
Query: 61  ttattttaactgcagtcctgctctgtttattaatctatagtacattcagtctatcatatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttattttaactgcagtcctgctctgtttattaatctatagtacattcagtctatcatatg 320

                                                                       
Query: 121 tatcacaagagtaacgaatcactcctgctccttgcttgtcaatcactgacagtgaagcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatcacaagagtaacgaatcactcctgctccttgcttgtcaatcactgacagtgaagcac 380

                                                                       
Query: 181 tgtttccacttcattctcacgatgtttatatttacctctggacatgcccagtatttcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 381 tgtttccacttcattctcacgatgtttatatttacctctggacatgcccagtatttctca 440

                                                                       
Query: 241 ctttatatatttctaagagatgggaagtagtctttgtttctactttcagaaacacaatat 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctatatatttctaagagatgggaagtagtctttgtttctactttcagaaacacaatat 500

                                                                       
Query: 301 ttttgagatatttcttatagtgtgcactatcaaaagattaagatttacaaatatattcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttgagatatttcttatagtgtgcactatcaaaagattaagatttacaaatatattcat 560

                                                                       
Query: 361 atggacttctaagaaaggctaggttaaggatgagttgtttagtccctcaatatttttatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atggacttctaagaaaggctaggttaaggatgagttgtttagtccctcaatatttttatt 620

                                                                       
Query: 421 ttggagatttaatacccttggatatctataaagtctgttgtgggaatacgttatggagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttggagatttaatacccttggatatctataaagtctgttgtgggaatacgttatggagaa 680

                                                                       
Query: 481 tgtaaataacctctgtctctttttcatttatttaaattaatgcagatcagcatagcgact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtaaataacctctgtctctttttcatttatttaaattaatgcagatcagcatagcgact 740

                  
Query: 541 gttctag 547
           |||||||
Sbjct: 741 gttctag 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)