BAC Information

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BAC

Clone NameMSMg01-420P09
Chromosome6 (Build37)
Map Location 38,933,007 - 38,933,487
singlet/doubletsinglet
Overlap geneTbxas1
Upstream geneSvopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2
Downstream gene1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2, Braf, Fth-ps2, Mrps33, LOC665247, LOC665254
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420P09.T7 (MSMg01no420_p09.b1)MSMg01-420P09.TJ (MSMg01no420_p09.g1)
ACCAG515702AG515703
length710772
length of high quality
(start - end)		---481 (68 - 548)
definitionCHROMAT_FILE: MSMg01no420_p09.b1 PHD_FILE: MSMg01no420_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:57 2005CHROMAT_FILE: MSMg01no420_p09.g1 PHD_FILE: MSMg01no420_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTCTTCCCTTTTTTTTTTTNCCCTCTCTAAATGGGCGGGCGANAAGA
GACTCACCTACCAAAAGAGGAGCGNAGAAACCCTTGTTTCCCGACCAGGC
CCANGCNNCTTCAAGATGAGGCATCCTCCACCATATCTATTCGCCGGAGA
CAAGATGGAGGAAATCTTCGAAGATCATAGATGTGCAGAACCTCCTTACT
AACCGTTGACCATTCGGTTGTAGCCTCCCATCACCGAGGGCAAAAGCCCC
TTTCAAAAAGTAATAAAAAAGCATGGTGCCCCCCTTTGGCCAATGCGAGG
CCCTAAGGTCACCAACCCCTTTGGGGTGGTCCCCCCCTCTGTTGGTTCCG
CTCTCCACCCTATACACCGTTCCTCCCTTATAATTCCTCTCCTTTCTTCC
CTTTTTTCCTTTCCCTTTTCTCTCCCATCACCTTTTTTTTTTCTTTTTTT
TTACCTCTTCCCCTTTTTTTCCCCTCTCACTTTTTTCCCTCCCTTTCCCC
CCCCCTTTTTTTACTCCCTTTTTCTCTTCTTCCCCCCCCCTTTTTCCCCT
TTTTCTTTTGGTATCATATTCCCCCCCTACCCCTTGCTCCCCCCNTCCCC
CCTATTTTCCTGACTTCCTTCCTCTTTTTCCCCTTCCCTCTGTTATTCAT
CTCTCCCCCACACACTCCTTCTAATACCTCTTTTTTCTATCTCTCCGCCC
CCTCCTACTT

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCATTCAAACCACCACAAACAAGAAGCAAATTA
AGTAGCTTCTACGGGGCGAGGTCTGCTTCCCTCAAAACTTCTAAAAGAGT
TCCTGAGAAATGCCCACAACGGCTGCAAAGTTGGCATTTATACCTAGGAA
ACACTCCAAGAAAACTAGAGCAGAAGAGAAATTGGCGCTGGTAGAAATGC
TACAGCCAGGGGAGTTGGCTAAAGCTGTGTTCAAAGCTAGAGGAGCCACG
GGGCACGGGCCATGTGACTGAGAAATACCAAGCAAGGTTAATAAATAGCA
GCGGGAGAGCAAGCTTTGAGGGTCTGTGCTTACATCTTTCTTAGGAATCC
TGTAAGCTACAGAAGAAAGATAAACAATATCAGTAGGGAAATTAGCCCCC
ACGGATTAACAGCAGGAGTCTACAGAGGACCCCGGTGCCAGTTCAAGTCT
CCAGCCTTCTTCTCCTGCCTTTTACCTCTGATGAACAAATTCCAAATAGA
AGAAGCGGTGGTGCTTAGTAGTGCCCACATTTCCTCACAGTGAGAAGACA
GAAACTCGAACAAAGAAGGTTAGTGACCTTCATGTTGATTCTTAGAGAGA
GCCTCACGTGAGTTAATAAACAGATGCTTGTGCCAATTTCAAAAACCACA
GTATCAGCCATCTCTTTCCTAATCAAATTAATAACCCCTGTCGTGTGTTG
TGGGTGGGTGTGGGTGGCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_p09.g1 MSMg01no420_p09.g1 CHROMAT_FILE:
MSMg01no420_p09.g1 PHD_FILE: MSMg01no420_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:57 2005
         (481 letters)



>mm_chr6_38932807_38933687
          Length = 881

 Score =  907 bits (469), Expect = 0.0
 Identities = 478/481 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattcaaaccaccacaaacaagaagcaaattaagtagcttctacggggcgaggtctgct 60
           |||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||
Sbjct: 201 tcattcaaaccaccacaaacaagaagcaaaataagtaacttctacgggccgaggtctgct 260

                                                                       
Query: 61  tccctcaaaacttctaaaagagttcctgagaaatgcccacaacggctgcaaagttggcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccctcaaaacttctaaaagagttcctgagaaatgcccacaacggctgcaaagttggcat 320

                                                                       
Query: 121 ttatacctaggaaacactccaagaaaactagagcagaagagaaattggcgctggtagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatacctaggaaacactccaagaaaactagagcagaagagaaattggcgctggtagaaa 380

                                                                       
Query: 181 tgctacagccaggggagttggctaaagctgtgttcaaagctagaggagccacggggcacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctacagccaggggagttggctaaagctgtgttcaaagctagaggagccacggggcacg 440

                                                                       
Query: 241 ggccatgtgactgagaaataccaagcaaggttaataaatagcagcgggagagcaagcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggccatgtgactgagaaataccaagcaaggttaataaatagcagcgggagagcaagcttt 500

                                                                       
Query: 301 gagggtctgtgcttacatctttcttaggaatcctgtaagctacagaagaaagataaacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagggtctgtgcttacatctttcttaggaatcctgtaagctacagaagaaagataaacaa 560

                                                                       
Query: 361 tatcagtagggaaattagcccccacggattaacagcaggagtctacagaggaccccggtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatcagtagggaaattagcccccacggattaacagcaggagtctacagaggaccccggtg 620

                                                                       
Query: 421 ccagttcaagtctccagccttcttctcctgccttttacctctgatgaacaaattccaaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccagttcaagtctccagccttcttctcctgccttttacctctgatgaacaaattccaaat 680

            
Query: 481 a 481
           |
Sbjct: 681 a 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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