Query= MSMg01no421_c01.b1 MSMg01no421_c01.b1 CHROMAT_FILE:
MSMg01no421_c01.b1 PHD_FILE: MSMg01no421_c01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:10 2005
(249 letters)
>mm_chr6_14052859_14053506
Length = 648
Score = 445 bits (230), Expect = e-129
Identities = 244/252 (96%), Gaps = 7/252 (2%)
Strand = Plus / Minus
Query: 1 caccaagttaacttgagaggtttttcaatggtctatggttttcatttatagaaccatctt 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 caccaagttaatttgagaggtttttcaatggtctatggttttcatttatagaaccatctt 389
Query: 61 atgtgcattattctatggacagtacactatcttgatatacttatttgacttgaatagatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atgtgcattattctatggacagtacactatcttgatatacttatttgacttgaatagatg 329
Query: 121 atgaataaatttaaaaattcaccttacagataaatttgcacatgtcagagtaaatcccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 atgaataaatttaaaaattcaccttacagataaatttgcacatgtcagagtaaatcccaa 269
Query: 181 ag---ttttagtttcttcctgccaagttttcaactcattataggattccattggtagaat 237
|| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agcaa----agtttcttcctgccaagttttcaactcattataggattccattggtagaat 213
Query: 238 ctgagacacaga 249
||||||||||||
Sbjct: 212 ctgagacacaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 648
Length adjustment: 9
Effective length of query: 240
Effective length of database: 639
Effective search space: 153360
Effective search space used: 153360
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no421_c01.g1 MSMg01no421_c01.g1 CHROMAT_FILE:
MSMg01no421_c01.g1 PHD_FILE: MSMg01no421_c01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:10 2005
(539 letters)
>mm_chr6_13887834_13888772
Length = 939
Score = 1009 bits (522), Expect = 0.0
Identities = 531/534 (99%)
Strand = Plus / Plus
Query: 6 aattcctctcaccattccaaccctgtgctccttcctctgtgttattcacatatttcacct 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattcctctcaccattccaaccctgtgctccttcctctgtgttattcacatatttcacct 265
Query: 66 ggagggaggatttctgtcagcctggtgtcatagtctgtgcattttaatctgaacacatgg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ggagggaggatttctgtcagcctggtgtcatagtctgtgcattttaatctgaacacatgg 325
Query: 126 aatgtagaaaacggagttcaaaagtcatcacatagcaagttcaaggtgagcatgggctac 185
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aatgtagaaaaaggagttcaaaagtcatcacatagcaagttcaaggtgagcatgggctac 385
Query: 186 aagaggctctttctcaacaaaacaaacacaaaagtcaacatggaggcttgtcccatgtag 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aagaggctctttctcaacaaaacaaacacaaaagtcaacatggaggcttgtcccatgtag 445
Query: 246 actgcatatcctggagctagacagaggggcatttcagacaactagaaacagcacggaaga 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 actgcatatcctggagctagacagaggggcatttcagacaactagaaacagcacggaaga 505
Query: 306 catggtggattctcaggtttctccttcccagaataacaaagcttgggcctagactagaaa 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 catggtggattctcaggtttctccttcccagaataacaaagcttgggcctagactagaaa 565
Query: 366 gctctattagcttttgttctcttcttccctctttcaaaggcttggacctaactgccagct 425
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gctctattagcttttgtcctcttcttccctctttcaaaggcttggacctaactgccagct 625
Query: 426 cctctgcccactgctgtcccactgttgcttggcagacacggagagagacttttgtgttga 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cctctgcccactgctgtcccactgttgcttggcagacacggagagagacttttgtgttga 685
Query: 486 ctggaattctctgtctctgtctagggagatgtaggtccagctaaggtgaacagt 539
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ctggaattttctgtctctgtctagggagatgtaggtccagctaaggtgaacagt 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
