BAC Information

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BAC

Clone NameMSMg01-421I02
Chromosome6 (Build37)
Map Location 99,390,367 - 99,390,546
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665963, LOC665979, Foxp1
Downstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703, Rybp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421I02.T7 (MSMg01no421_i02.b1)MSMg01-421I02.TJ (MSMg01no421_i02.g1)
ACCAG516116AG516117
length789776
length of high quality
(start - end)
49 (72 - 120)186 (63 - 248)
definitionCHROMAT_FILE: MSMg01no421_i02.b1 PHD_FILE: MSMg01no421_i02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:42 2005CHROMAT_FILE: MSMg01no421_i02.g1 PHD_FILE: MSMg01no421_i02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAAAATTGCGGCCCTAAACGACTCCTATACGTCCAGCACCGCGGAATTC
TCTCCTAAGTTTACTATAAACCTTTATCAGTGACAAATATGATGATGATA
ATGATAATGATGATGATGATCCCCGTGGTGGTGATGACCCTGCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCTCTTCTC
CTCCTTCTCCAAACACACCCCCCCCCCCCCCTCCCCCGTCCCCCCCCCCT
CTCTTTTTTCCCCCCCTCCCCCCCACCCCCGCCCCCCCCGCCCTCCCTAA
CCACCCCGCCCCCCCCCCCTTTCCCTACCTTTCCCCCGNNANCCCACCGC
CCCGCACCCCTCTTTCTTTCCCCCCCCCCCCCCCTCCCTCGCCCCTCCCC
CCCCTCCCCCCTCCTCCCCCCCCTCCCTTCCCCCCCCCCCCCCCCCGTCT
CCCCCTCCCTATTCCCCCTCTCCCCCCCCCCTCCACCCCCCCCTCTCCTC
CCCCCATTTCTAACCCCCCCCTCCCCTCCTCCCCCCCCCCACCCCTTCCT
CTTTTCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTC
CCCATCCTCCCCTCCCCCCCAATCTCACTCCCCCCCCCCCTCCCCTCCCT
CCTCCACCCCCCCTTCCCCCCCCACCCCCTCCCCCCCTTCTCCTCCCCCC
CCCGCCCTCCACCTCCCGTCCCCCCCCATCTCCCCCCCCCCCTCCTCCTC
CCCACCCCTCCCCTCCCCCCCCCCCCAACCCCCCCCCCC
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCCCAATTCTGATTAGAAAACATAGCTCCTAATCTTC
CACAGGGATAAGTAGAGGGGTGTCTAGCTTCACAGAAGAGACTCTCATCA
GGAATACCACCATCACTTAAGAACTTTCTAGACATTCCCAGGCCCTGTGT
TAGATCAACCTCCTGAATAAACAGCTAGGACCTGTGCTTTAGAAAGCGCC
AGTAGACCCTCTTGCTTGATCAAAATGGAAAACGCGCCCCTGGAGGCTTA
TGGACAGAGCCTCACTGGAATGTAATTTTGTAAGATGCCTCATGCATGAA
TACACTGCTTGCAATTCTGCTGGCCCACAGTCCTCCCTTTCCGGATAGAC
TGTCTTTAGTAGAAATGGAATCCTGATTACATGCAGACCTTGGGGGAGGC
AGGCAAACAGGCGGGCAGTCAGTCAGTGCAGCCAGGGGCTTTCATTTCCC
CCTTCTCCTCTCAGCCAGAGCCGAGTAGGGCGGTTCCCGGGCAACCCAGG
CTTTGGGAGGTTGTTTTTGAAAAATAGATGCTAATCCAACCCGAGCTGTT
GCTTGTTTTCCCGGTGTCCTGGTAGTGTGTAGGTAAACAATTTTGATTGC
CGGGTCCCTGTCCTCTATGGTACTCGGTAGTTGTTCCTTTCCAGGTTCCC
CTGCATACTTTGGTACTCAAGTAGTGGATTGCTTTCTGGCGGAAAAATAT
TCCCGTTATTATCCTCGACTTTGACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_i02.g1 MSMg01no421_i02.g1 CHROMAT_FILE:
MSMg01no421_i02.g1 PHD_FILE: MSMg01no421_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:42 2005
         (186 letters)



>mm_chr6_99390162_99390747
          Length = 586

 Score =  348 bits (180), Expect = e-100
 Identities = 180/180 (100%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattctgattagaaaacatagctcctaatcttccacagggataagtagaggggtgtctag 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aattctgattagaaaacatagctcctaatcttccacagggataagtagaggggtgtctag 326

                                                                       
Query: 66  cttcacagaagagactctcatcaggaataccaccatcacttaagaactttctagacattc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttcacagaagagactctcatcaggaataccaccatcacttaagaactttctagacattc 266

                                                                       
Query: 126 ccaggccctgtgttagatcaacctcctgaataaacagctaggacctgtgctttagaaagc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccaggccctgtgttagatcaacctcctgaataaacagctaggacctgtgctttagaaagc 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)