BAC Information

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BAC

Clone NameMSMg01-422C16
Chromosome6 (Build37)
Map Location 49,046,217 - 49,046,776
singlet/doubletsinglet
Overlap geneIgf2bp3
Upstream geneZfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011
Downstream geneLOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210, Npy, LOC100041653
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422C16.T7 (MSMg01no422_c16.b1)MSMg01-422C16.TJ (MSMg01no422_c16.g1)
ACCAG516621AG516622
length724722
length of high quality
(start - end)
560 (64 - 623)232 (323 - 554)
definitionCHROMAT_FILE: MSMg01no422_c16.b1 PHD_FILE: MSMg01no422_c16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:33 2005CHROMAT_FILE: MSMg01no422_c16.g1 PHD_FILE: MSMg01no422_c16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGGAATTCAA
GGACAATTTACTATACAGAGCTAGTTCCAGCAGAGCCAGGGCTTCATAGA
GAAACCCTGTCTCAAAGAAGAAAGAAGCAGGGTATGGTGTGGCTGAATTT
TAAACATGAATGACTTGGTGAGAATTTCAGAACTGTCTCTTGAATTAGCT
CTGGGAAAGGAACAGCTGAAATGACCAGAGTACAATATCACAACAGCAAC
AAAGTGCAATGTGAGGAGTCTCTGCTGGCCTGAGCGTGACAGAAGCTGCT
GCTCTGAAGGCACGAGGTCCTGCCCAATAGAGCAATCCAAATCTGAAGTA
ACTGTGCTTTTCATACAGGAGATGGTGCCCCAGACAAACAGTAAGTCATG
TGCGCTATTGGCAACATGTCTTCAGTGACTCATCGGCCATCTGAAGCTGG
AAGAGGGCGTTTCTGAATATCACCCATCTCCCCTGGCTTCAGTTCTGTTC
CCCCAGCCATCTCACTGGCCATAAATTATTTCACAAGGGAATTTTCCTCT
GAGGCACAGGCAGCTCGTGGAAACATCTATCCACTTGACTGTCTGTACAG
TGTGTTCTCACACGGAATCCAGCATTGAGAAGCTGTTTTCAGGATCTACC
CCAGATAAGCACACCATTTTCGTCTTGATGGACAGACCCTAACCGACAGA
AGAAAAGCCCCCTCACATCGTCCG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTCAGAAATTCCAGAGATCCTCCTGCTTCTGCCACTACCACCTGG
GTGCTGGGGTTAAATGGAACACCTCTACCCTGAGCAAGAATTTGTAAGAT
TCTAGTAAACTCAGAAGACAAGTTTATTAAGTCTAAACTCTGCTTTTTTT
TTTTTTAACCAAATGTTCAACAACAAGCAGCTGAAACAGATGTTTGTTTT
GAGCAGATGTTGCTGTAAATTTTGTAGACAAGCGTGAAAATTGTCACTAT
TTGTGATTGCTATTAGTAATCTTGTTCAGAACTCCCAGCCAAAGCTATGT
AGACACATTTTCAAAAATCCAAACCTGTAAGGGCAGGACGTATGCAAACA
AGACTGAATCCAGCCGGGCGGTGCTTTAATCCCAGCACTCAGGAGGCAGA
GGCAGGTGGATCTCTGAGTTCGAGGGCAGCCTGGTCTACAAAGTGAGTTC
CAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACAAAACAA
AACAAAAAAACAACCCCCCCAAACAAAACCAAAAACAAACCAAGACTGTA
TCCAACCTTCCTTCATCATTCCTTACCTCTGAGTTTCATTCTGTCAACTG
ATTTTTATTTTATCCTCCCCCACGATAATAAACTTTTTATTTAAGATTTA
TTTATTTCTTATTTGGAAGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_c16.b1 MSMg01no422_c16.b1 CHROMAT_FILE:
MSMg01no422_c16.b1 PHD_FILE: MSMg01no422_c16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:33 2005
         (560 letters)



>mm_chr6_49046017_49046976
          Length = 960

 Score = 1075 bits (556), Expect = 0.0
 Identities = 559/560 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacagagctagttccagcagagccagggcttcatagagaaaccctgtctcaaagaagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacagagctagttccagcagagccagggcttcatagagaaaccctgtctcaaagaagaaa 260

                                                                       
Query: 61  gaagcagggtatggtgtggctgaattttaaacatgaatgacttggtgagaatttcagaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagcagggtatggtgtggctgaattttaaacatgaatgacttggtgagaatttcagaac 320

                                                                       
Query: 121 tgtctcttgaattagctctgggaaaggaacagctgaaatgaccagagtacaatatcacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtctcttgaattagctctgggaaaggaacagctgaaatgaccagagtacaatatcacaa 380

                                                                       
Query: 181 cagcaacaaagtgcaatgtgaggagtctctgctggcctgagcgtgacagaagctgctgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagcaacaaagtgcaatgtgaggagtctctgctggcctgagcgtgacagaagctgctgct 440

                                                                       
Query: 241 ctgaaggcacgaggtcctgcccaatagagcaatccaaatctgaagtaactgtgcttttca 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgaaggcacgagggcctgcccaatagagcaatccaaatctgaagtaactgtgcttttca 500

                                                                       
Query: 301 tacaggagatggtgccccagacaaacagtaagtcatgtgcgctattggcaacatgtcttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacaggagatggtgccccagacaaacagtaagtcatgtgcgctattggcaacatgtcttc 560

                                                                       
Query: 361 agtgactcatcggccatctgaagctggaagagggcgtttctgaatatcacccatctcccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtgactcatcggccatctgaagctggaagagggcgtttctgaatatcacccatctcccc 620

                                                                       
Query: 421 tggcttcagttctgttcccccagccatctcactggccataaattatttcacaagggaatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggcttcagttctgttcccccagccatctcactggccataaattatttcacaagggaatt 680

                                                                       
Query: 481 ttcctctgaggcacaggcagctcgtggaaacatctatccacttgactgtctgtacagtgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcctctgaggcacaggcagctcgtggaaacatctatccacttgactgtctgtacagtgt 740

                               
Query: 541 gttctcacacggaatccagc 560
           ||||||||||||||||||||
Sbjct: 741 gttctcacacggaatccagc 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)