Query= MSMg01no422_f18.b1 MSMg01no422_f18.b1 CHROMAT_FILE:
MSMg01no422_f18.b1 PHD_FILE: MSMg01no422_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:47 2005
(206 letters)
>mm_chr6_144848064_144848669
Length = 606
Score = 246 bits (127), Expect = 9e-70
Identities = 148/155 (95%)
Strand = Plus / Minus
Query: 7 gaattctcttcttttcctttctagtcaggagagggcggtgtgaacacttctcaaagggtt 66
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gaattctcttctggtgctttctagtcaggagagggcggtgtgaacacttctcaaagggtt 254
Query: 67 atcattccaaatgccaaccagatccaggcactgggcctctttcgtgttgtctgtgtctgt 126
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 253 atcattccaaatgccaaccagatccaggcactgggcctctttcgtgttgtgtgtgtgtgt 194
Query: 127 gtgtgtgtgtgtatgtgtgtgtgtgtgtgcgtgtg 161
|||||||||||| |||||||||||||||| |||||
Sbjct: 193 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 159
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 606
Length adjustment: 8
Effective length of query: 198
Effective length of database: 598
Effective search space: 118404
Effective search space used: 118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no422_f18.g1 MSMg01no422_f18.g1 CHROMAT_FILE:
MSMg01no422_f18.g1 PHD_FILE: MSMg01no422_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:47 2005
(474 letters)
>mm_chr6_144685007_144685880
Length = 874
Score = 791 bits (409), Expect = 0.0
Identities = 461/483 (95%), Gaps = 10/483 (2%)
Strand = Plus / Plus
Query: 1 catagggaaaaaa-tgtaatggtctattttttacaggagtataaaaaaattacaaaattc 59
||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 193 catagggaaaaaaatgtaatggtctattttttacaggagtataaaaaattta-aaaattt 251
Query: 60 ctatagagctacaaagaagcccaaatggccaaatacatcttgagaaaacaaacaaacaaa 119
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 252 ctatagagctacaaagaagcccaaatggccaaatatgtcttgagaaaacaaacaaacaaa 311
Query: 120 caaa--------gttaagggcagatagttcctgatttcaaaatatattagaaagtcatgg 171
|||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 caaacaaacaaagttaagggcagatagttcctgatttcaaaatatattagaaagtcatgg 371
Query: 172 aaacggaagcacacacacggccaactgtaccaagagaatcctagggaagggcgagcctta 231
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 372 aaacggaagcacacacacggccaactgtaccaagagaatcctggggaagggcgagcctta 431
Query: 232 taaacctatgacgctggtaaagctgggtattcacgggtgaagagtgaagtcatgccttca 291
||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 432 taaacctatgacgctgggaaagctgggtattcatgggtgaagagtgaagtcgtgccttca 491
Query: 292 tttcactctgcaagccaagtcagctgagggtgcagccgaagacctaggagccaagacaac 351
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 492 tttcactctgcaagccaagtcagctgagggtgaagccgaagacctaggagccaagacaac 551
Query: 352 agctagaagaaaatctctagagcatggcaacaaaagcataaaataggagcaaaattagaa 411
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 552 agctagaagaaaatctctagagaatggcaacaaaagcataaaataggagcaaaattagaa 611
Query: 412 aatgggattatatccaaccaagaagcacagcctggaatgaagatggtgagcacgtgaaaa 471
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 612 aatgggattatatccaaccgagaagcacagcctggaatggagatggtgagcacgtgaaaa 671
Query: 472 atc 474
|||
Sbjct: 672 atc 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
