BAC Information

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BAC

Clone NameMSMg01-422K11
Chromosome6 (Build37)6 (Build37)
Map Location 132,893,589 - 132,893,782132,623,528 - 132,623,773
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC639802, EG114600, Prb1, LOC631126, LOC100043878, Prpmp5, EG667929, EG381818, Prh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1
Downstream geneTas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618, 5530400C23Rik, EG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422K11.T7 (MSMg01no422_k11.b1)MSMg01-422K11.TJ (MSMg01no422_k11.g1)
ACCAG516992AG516993
length723720
length of high quality
(start - end)
197 (325 - 521)246 (68 - 313)
definitionCHROMAT_FILE: MSMg01no422_k11.b1 PHD_FILE: MSMg01no422_k11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:09 2005CHROMAT_FILE: MSMg01no422_k11.g1 PHD_FILE: MSMg01no422_k11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:09 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(132,893,589 - 132,893,782)(132,623,528 - 132,623,773)
sequence
TTGCGGCCGCTAAACGACTACTATTTTCAGACACATGCGCNGGAATCTTT
GAGGTTTCCTCATTATGAGAGATACAGGGTAACACTTCATGTCTGTTTCC
TGGTCCTAATAAGTACCATATACTGATTTGTGGCTTATTATGGCTTGTTA
TCTAAATTATAAAAGGTTGACTCTCCTTCTGATGACTCTGAGAAAGAAAG
AGAAAGATATTAATAAGAAAACACAACAGGTATTTTACTCTAATCACTCT
CCACATCTCTGGAGATAGTAAACCATTCAAGTCAGTTTCAGAGCTTGAGT
TTGACACTTCCAATTTTTTTCTTATTTCAGATTTTGAATGTTAAATGACA
TCTATACTTGATAAGCCTAAATGACAAGGTTAAAGCCTGCAAAACTGTGA
AAGAGAATATGTCTTCATTTGCATTCTAACAAATGAGAAGTCAACTTTTC
TCCCAGCATCTGCTGCGGAAAGGTCCAGCCTACAATGCAATCTGTGGATA
AAACTTCTGGTTTTTTTTTTGTTTGCTTGGTTTGGTTGTCTTGGTTTGGT
TTTGCTTCTTCTCCCACATCTTTCCCTGGCTTCTCCTACCTTATTTTTTA
TTCTTTTTTTTCCATTTTACTTCCCTCTTTTTGCTCTTTTGATCTCCTTT
TTTTTTTTTTTTTTTACTAACCACACTAACATATATTTCTACTTTATCTA
CTTTTATGCTACCGCTTTCCTCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACCATGGAGTAGGTGACTTCTGAATACATGCCA
TAAGGTTTTGGAAAACTGTGGTTAACAGCAGCCCAGATGGAATGTTGTAG
TTGTCCAGCAGCTTATGGTCAAGCAAGTTTCACCTGAAAGGAGGGTTGTA
ATGAAAAGGACCTGGTGGTGGGGGTGGGGTGCAGCTGAGTGGGAGCCCAA
GAGAAGAAGTCAAAACAAGGTTCTGATCAAGGCTGTAAGTTTAATTCTGT
AGCTGAAGCTTATACTTTCTTCAGCAAACAAAGGTCTTCTTGAGAAAGTT
TCTCTACAGACTAAACATAGATAGGAGTTACTCTTGGCTGAACACACTAC
TCTCTGACCTTGGCTACACACACTGCTCTCATGGCCTTGGCTATACAAAC
GGTTCTCATGGCAGTACTCTGACTTTTCACAGAATGTAGTAAATTATAAC
TCAGGATTATCAGTACAAAAATATCATAGAGGGTAGACCTCTGCCAAGAT
CTAGTGTTGATTAAAGCTTATTATAATTGTAAAGGTTGGGTGTTCTTTTA
TCTGTGAACTATGATCAAAATTCAATATTCCAGGCCTGGATTGATAATAC
TTATTTTTTTCCTACTATGTGTTTCTTGAACCCCTCATGAATTCCTCCTA
GTTATCCTTCTTCCCACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_k11.b1 MSMg01no422_k11.b1 CHROMAT_FILE:
MSMg01no422_k11.b1 PHD_FILE: MSMg01no422_k11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:09 2005
         (197 letters)



>mm_chr6_132893389_132893985
          Length = 597

 Score =  368 bits (190), Expect = e-106
 Identities = 193/194 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcagattttgaatgttaaatgacatctatacttgataagcctaaatgacaaggttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcagattttgaatgttaaatgacatctatacttgataagcctaaatgacaaggttaaa 260

                                                                       
Query: 61  gcctgcaaaactgtgaaagagaatatgtcttcatttgcattctaacaaatgagaagtcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcctgcaaaactgtgaaagagaatatgtcttcatttgcattctaacaaatgagaagtcaa 320

                                                                       
Query: 121 cttttctcccagcatctgctgcggaaaggtccagcctacaatgcaatctgtggataaaac 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttctcccagcatctgctgtggaaaggtccagcctacaatgcaatctgtggataaaac 380

                         
Query: 181 ttctggtttttttt 194
           ||||||||||||||
Sbjct: 381 ttctggtttttttt 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space:   111321
Effective search space used:   111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no422_k11.g1 MSMg01no422_k11.g1 CHROMAT_FILE:
MSMg01no422_k11.g1 PHD_FILE: MSMg01no422_k11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:09 2005
         (246 letters)



>mm_chr6_132623328_132623973
          Length = 646

 Score =  460 bits (238), Expect = e-134
 Identities = 244/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   accatggagtaggtgacttctgaatacatgccataaggttttggaaaactgtggttaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accatggagtaggtgacttctgaatacatgccataaggttttggaaaactgtggttaaca 260

                                                                       
Query: 61  gcagcccagatggaatgttgtagttgtccagcagcttatggtcaagcaagtttcacctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagcccagatggaatgttgtagttgtccagcagcttatggtcaagcaagtttcacctga 320

                                                                       
Query: 121 aaggagggttgtaatgaaaaggacctggtggtgggggtggggtgcagctgagtgggagcc 180
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 321 aaggagggttgtaatgaaaaggacctggtggtgggggtggggtacagctgagtgggggcc 380

                                                                       
Query: 181 caagagaagaagtcaaaacaaggttctgatcaaggctgtaagtttaattctgtagctgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagagaagaagtcaaaacaaggttctgatcaaggctgtaagtttaattctgtagctgaa 440

                 
Query: 241 gcttat 246
           ||||||
Sbjct: 441 gcttat 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)